Updated 6 months ago
connected-components-3d
Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)
Updated 6 months ago
kimimaro
Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
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edt
Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
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https://github.com/seung-lab/fastremap
Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
Updated 4 months ago
https://github.com/google-research/sofima
Scalable Optical Flow-based Image Montaging and Alignment
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multiverseg
MultiverSeg: Scalable Interactive Segmentation of Biomedical Imaging Datasets with In-Context Guidance
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gandlf
A generalizable application framework for segmentation, regression, and classification using PyTorch