Scientific Software
Updated 6 months ago

BlueCelluLab — Peer-reviewed • Rank 6.1 • Science 100%

BlueCelluLab: Biologically Detailed Neural Network Experimentation API - Published in JOSS (2024)

Updated 5 months ago

https://github.com/bluebrain/bioexplorer • Rank 10.0 • Science 67%

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

Updated 5 months ago

nat • Rank 13.7 • Science 59%

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

Updated 5 months ago

https://github.com/bluebrain/morphio • Rank 17.6 • Science 23%

A python and C++ library for reading and writing neuronal morphologies

Updated 6 months ago

bluecellulab • Science 67%

Biologically detailed neural network simulations and analysis API

Updated 5 months ago

https://github.com/csinva/biophysical-threshold-simulations • Science 13%

Simulations for characterizing stochastic threshold in biophysical neurons.

Updated 6 months ago

xolotl • Science 67%

A MATLAB neuron simulator. Very fast (written in C++). Flexible (fully object oriented). Immediate (live manipulation in MATLAB). Comes with a powerful parameter optimizer. Get started ➡️

Updated 5 months ago

https://github.com/bluebrain/emodel-generalisation • Science 62%

Generalisation of electrical models of neurons with MCMC

Updated 5 months ago

https://github.com/bluebrain/ultraliser • Science 36%

Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.

Updated 6 months ago

gutanalysistoolbox • Science 49%

Analysis and characterisation of cells within the gut wall using deep learning models. The current focus is on studying enteric neurons and enteric glia.

Updated 6 months ago

pyoelectricity • Science 57%

Source code for the associated publication: Schlötter Moritz, Maret Georg, Kleineidam Christoph J (2023) Annihilation of action potentials induces electrical coupling between neurons eLife 12:RP88335