GitHub

https://github.com

Updated 9 months ago

https://github.com/daducci/amico • Rank 16.0 • Science 49%

Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data

Scientific Software
Updated 10 months ago

Water Systems Integrated Modelling framework, WSIMOD — Peer-reviewed • Rank 6.0 • Science 59%

Water Systems Integrated Modelling framework, WSIMOD: A Python package for integrated modelling of water quality and quantity across the water cycle - Published in JOSS (2023)

Political Science
Scientific Software · Peer-reviewed
Updated 10 months ago

kelp-o-matic • Rank 11.0 • Science 54%

Segmentation Tools for Remotely Sensed RPAS Imagery

Scientific Software
Updated 10 months ago

Gravity — Peer-reviewed • Rank 5.9 • Science 59%

Gravity: Estimation Methods for Gravity Models in R - Published in JOSS (2018)

Updated 10 months ago

seedbank • Rank 10.9 • Science 54%

Manage seeds across multiple Python RNGs.

Updated 9 months ago

IsoplotR • Rank 15.9 • Science 49%

An alternative to Isoplot written in R

Updated 10 months ago

py-templateflow • Rank 5.9 • Science 59%

A python client to query TemplateFlow via pyBIDS

Scientific Software
Updated 10 months ago

beamshapes — Peer-reviewed • Rank 5.9 • Science 59%

beamshapes: a Python package to generate directivity patterns for various sound source models - Published in JOSS (2022)

Mathematics
Scientific Software · Peer-reviewed
Updated 9 months ago

onstove • Rank 5.9 • Science 59%

This repository contain the general code for the Open Source Spatial Clean Cooking Tool OnStove

Scientific Software
Updated 10 months ago

Surfaxe — Peer-reviewed • Rank 5.9 • Science 59%

Surfaxe: Systematic surface calculations - Published in JOSS (2021)

Artificial Intelligence and Machine Learning Engineering
Scientific Software · Peer-reviewed
Updated 9 months ago

moveHMM • Rank 15.9 • Science 49%

R package - Animal movement modelling using hidden Markov models

Updated 10 months ago

frame-semantic-transformer • Rank 10.9 • Science 54%

Frame Semantic Parser based on T5 and FrameNet

Updated 10 months ago

GLCMTextures • Rank 10.9 • Science 54%

This R package calculates the most common gray-level co-occurrence matrix (GLCM) texture metrics used for spatial analysis on raster data.

Updated 9 months ago

differentialabundance • Rank 7.9 • Science 57%

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

Updated 9 months ago

https://github.com/bowang-lab/bionic • Rank 5.9 • Science 59%

Biological Network Integration using Convolutions

Updated 10 months ago

SimpleDiffEq • Rank 10.9 • Science 54%

Simple differential equation solvers in native Julia for scientific machine learning (SciML)

Updated 9 months ago

questionr • Rank 18.9 • Science 46%

R package to make surveys processing easier

Updated 9 months ago

SpatialFeatureExperiment • Rank 15.9 • Science 49%

Extension of SpatialExperiment with sf

Updated 9 months ago

methrix • Rank 15.8 • Science 49%

An R :package: for fast and flexible DNA methylation analysis

Updated 10 months ago

xsmiles • Rank 7.8 • Science 57%

A JupyterLab plugin implementing the XSMILES visualization

Updated 10 months ago

df2onehot • Rank 10.8 • Science 54%

Convert a unstructured array into a stuctured dataframe.

Updated 10 months ago

specify7 • Rank 10.8 • Science 54%

An open-source platform for managing biological and geological collections.

Updated 9 months ago

ideal • Rank 15.8 • Science 49%

Interactive Differential Expression AnaLysis - DE made accessible and reproducible

Updated 10 months ago

dgsh • Rank 7.8 • Science 57%

Shell supporting pipelines to and from multiple processes

Updated 10 months ago

queueing-tool • Rank 10.8 • Science 54%

Simulator for queueing networks written in Python

Updated 10 months ago

nbomicroscopymetadataspecs • Rank 5.8 • Science 59%

The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration with the BINA Data Management and Quality Control Working Group (https://www.bioimagingna.org/qc-dm-wg) for documenting microscopy experiments and assessing the quality of image data.

Updated 9 months ago

meld • Rank 18.8 • Science 46%

Quantifying experimental perturbations at single cell resolution

Updated 10 months ago

SpaDES.tools • Rank 10.8 • Science 54%

Additional modelling tools for Spatial Discrete Event Simulation (SpaDES) module development

r
Updated 10 months ago

oscar.jl • Rank 10.8 • Science 54%

A comprehensive open source computer algebra system for computations in algebra, geometry, and number theory.

Updated 10 months ago

twoaxistracking • Rank 7.7 • Science 57%

twoaxistracking is a python package for simulating two-axis tracking solar collectors, particularly self-shading.

Updated 10 months ago

medicalgpt • Rank 10.7 • Science 54%

MedicalGPT: Training Your Own Medical GPT Model with ChatGPT Training Pipeline. 训练医疗大模型,实现了包括增量预训练(PT)、有监督微调(SFT)、RLHF、DPO、ORPO、GRPO。

Updated 10 months ago

lingua-franca • Rank 10.7 • Science 54%

Intuitive concurrent programming in any language

Updated 10 months ago

rchart • Rank 2.7 • Science 62%

Comprehensive charting package to plot and compare data across scenarios, regions, sectors and time periods.

Updated 10 months ago

sog-bloomcast-ensemble • Rank 2.7 • Science 62%

Successor to the SoG-bloomcast project that uses an ensemble forecast.

Updated 10 months ago

decision • Rank 2.7 • Science 62%

Data-driven Efficient Configuration of Instruments by Scientific Intent for Operational Needs (DECISION)

Updated 10 months ago

phyluce • Rank 7.7 • Science 57%

software for UCE (and general) phylogenomics

Updated 10 months ago

suny-oswego-workshop-2024 • Rank 0.7 • Science 64%

Repository for my SUNY Oswego Workshop talk on April 9th and April 11th, 2024

Updated 10 months ago

anisotropio • Rank 0.7 • Science 64%

Toolkit for interfacing with shear-wave splitting codes.

Updated 10 months ago

@stdlib/string-base-format-tokenize • Rank 20.7 • Science 44%

Tokenize a string into an array of string parts and format identifier objects.

Updated 10 months ago

@stdlib/assert-tools-array-function • Rank 20.7 • Science 44%

Return a function which tests if every element in an array passes a test condition.

Updated 10 months ago

@stdlib/number-float64-base-to-float32 • Rank 20.7 • Science 44%

Convert a double-precision floating-point number to the nearest single-precision floating-point number.