EMC2 • Rank 11.2 • Science 49%

Earth Model Column Collabratory

qpdo • Rank 3.2 • Science 57%

The Quadratic Primal-Dual Optimizer

@stdlib/blas-ext-base-gapxsumkbn2 • Rank 3.2 • Science 57%

Add a constant to each strided array element and compute the sum using a second-order iterative Kahan–Babuška algorithm.

sbom-2023 • Rank 3.2 • Science 57%

Experimental Data about Java SBOMs https://arxiv.org/pdf/2303.11102.pdf

credibility • Rank 3.2 • Science 57%

Credibility library

napari-filament-annotator • Rank 6.2 • Science 54%

Annotation of filaments and other curvilinear structures in 3D.

sorsa • Rank 6.2 • Science 54%

SORSA: Singular Values and Orthonormal Regularized Singular Vectors Adaptation of Large Language Models

pyet-mc • Rank 6.2 • Science 54%

Collection of routines for modelling the energy transfer processes in lanthanide doped materials.

dione • Rank 6.2 • Science 54%

Dione is an anonymize and encrypted messaging system build on top on a peer to peer layer.

numbat • Rank 14.2 • Science 46%

Haplotype-aware CNV analysis from single-cell RNA-seq

SpineOpt.jl • Rank 11.2 • Science 49%

A highly adaptable modelling framework for multi-energy systems

reVX • Rank 11.2 • Science 49%

The Renewable Energy Potential(V) eXchange Tool: reVX

pvdegradationtools • Rank 11.2 • Science 49%

Set of tools to calculate degradation responses and degradation related parameters for PV.

Wflow • Rank 11.2 • Science 49%

Hydrological modeling

scikit-surgeryimage • Rank 11.1 • Science 49%

Image processing, using OpenCV.

neurips21-self-supervised-bug-detection-and-repair • Rank 6.1 • Science 54%

Replication Code for "Self-Supervised Bug Detection and Repair" NeurIPS 2021

@stdlib/stats-base-dsemch • Rank 3.1 • Science 57%

Calculate the standard error of the mean for a double-precision floating-point strided array using a one-pass trial mean algorithm.

@stdlib/stats-base-dstdevch • Rank 3.1 • Science 57%

Calculate the standard deviation of a double-precision floating-point strided array using a one-pass trial mean algorithm.

erkale • Rank 6.1 • Science 54%

ERKALE -- HF/DFT from Hel

data-visualization-tutorial • Rank 6.1 • Science 54%

A modular 4-hour tutorial in Data Visualization

https://github.com/brainglobe/brainreg-napari • Rank 9.1 • Science 51%

Automated 3D brain registration in napari with support for multiple species and atlases.

ArnoldiMethod • Rank 16.1 • Science 44%

The Arnoldi Method with Krylov-Schur restart, natively in Julia.

https://github.com/ctriermaansson/dnafusion • Rank 11.1 • Science 49%

Identification of gene-fusions, including EML4-ALK

stk • Rank 6.1 • Science 54%

The STK is a (not so) Small Toolbox for Kriging. Its primary focus is on the interpolation/regression technique known as kriging, which is very closely related to Splines and Radial Basis Functions, and can be interpreted as a non-parametric Bayesian method using a Gaussian Process (GP) prior.

ichthyop • Rank 6.1 • Science 54%

A Lagrangian tool for simulating ichthyoplankton dynamics

@digitallinguistics/scription2dlx • Rank 6.1 • Science 54%

A JavaScript library that converts scription text files to the Data Format for Digital Linguistics

https://github.com/althonos/nafcodec • Rank 11.1 • Science 49%

Rust coder/decoder for Nucleotide Archival Format (NAF) files.

https://github.com/cadet/rdm-example-simulated-moving-bed • Rank 1.1 • Science 59%

CADET case study from paper: Efficient numerical simulation of simulated moving bed chromatography with a single-column solver (He et al.)

@stdlib/blas-ext-base-gsort2sh • Rank 3.1 • Science 57%

Simultaneously sort two strided arrays based on the sort order of the first array using Shellsort.

dasymetric-toolbox-arcgispro • Rank 3.1 • Science 57%

@stdlib/blas-ext-base-sapxsumkbn2 • Rank 3.1 • Science 57%

Add a constant to each single-precision floating-point strided array element and compute the sum using a second-order iterative Kahan–Babuška algorithm.

@stdlib/stats-base-sstdevyc • Rank 3.1 • Science 57%

Calculate the standard deviation of a single-precision floating-point strided array using a one-pass algorithm proposed by Youngs and Cramer.

@stdlib/stats-base-snanstdevch • Rank 3.1 • Science 57%

Calculate the standard deviation of a single-precision floating-point strided array ignoring NaN values and using a one-pass trial mean algorithm.

@stdlib/blas-ext-base-dsort2sh • Rank 3.1 • Science 57%

Simultaneously sort two double-precision floating-point strided arrays based on the sort order of the first array using Shellsort.

sitreg • Rank 3.1 • Science 57%

Deep learning intra-modality image registration arhitecture fulfilling strict symmetry properties

biovalidator • Rank 6.1 • Science 54%

JSON validator derived from AJV supporting ontology and taxonomy validation.

d3pm • Rank 6.1 • Science 54%

Minimal Implementation of a D3PM in pytorch

ncvue • Rank 11.1 • Science 49%

A minimal GUI for a quick view of netcdf files. Aiming to be a drop-in replacement for ncview.

mpcsl • Rank 6.1 • Science 54%

A Modular Pipeline for Causal Structure Learning called MPCSL.

pycirclize • Rank 16.1 • Science 44%

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

https://github.com/cytomining/copairs • Rank 11.1 • Science 49%

Find profile pairs and compute metrics between them.

pygpsclient • Rank 16.1 • Science 44%

Python Graphical GPS Client Application supporting NMEA, UBX, SBF, RTCM3, NTRIP & SPARTN Protocols

https://github.com/bactopia/bactopia-py • Rank 11.1 • Science 49%

A Python package for working with Bactopia

echor • Rank 14.1 • Science 46%

Download EPA ECHO data in R

flixopt • Rank 11.1 • Science 49%

Vector based Energy Optimization Framework

bikenwgrowth • Rank 6.1 • Science 54%

Source code for the paper "Growing urban bicycle networks", exploring algorithmically the limitations of urban bicycle network growth

@stdlib/stats-base-nanstdevyc • Rank 3.0 • Science 57%

Calculate the standard deviation of a strided array ignoring NaN values and using a one-pass algorithm proposed by Youngs and Cramer.

@stdlib/stats-base-dsemwd • Rank 3.0 • Science 57%

Calculate the standard error of the mean for a double-precision floating-point strided array using Welford's algorithm.

@stdlib/stats-base-snanstdevyc • Rank 3.0 • Science 57%

Calculate the standard deviation of a single-precision floating-point strided array ignoring NaN values and using a one-pass algorithm proposed by Youngs and Cramer.

@stdlib/stats-base-dsvariancepn • Rank 3.0 • Science 57%

Calculate the variance of a single-precision floating-point strided array using a two-pass algorithm with extended accumulation and returning an extended precision result.

@stdlib/stats-base-dnanstdevpn • Rank 3.0 • Science 57%

Calculate the standard deviation of a double-precision floating-point strided array ignoring NaN values and using a two-pass algorithm.

@stdlib/stats-base-dnanstdevwd • Rank 3.0 • Science 57%

Calculate the standard deviation of a double-precision floating-point strided array ignoring NaN values and using Welford's algorithm.

git-lint • Rank 16.0 • Science 44%

A command line interface for linting Git commits.

apex • Rank 14.0 • Science 46%

Phylogenetic Methods for Multiple Gene Data

pal • Rank 6.0 • Science 54%

Positional Astronomy Library

epwshiftr • Rank 11.0 • Science 49%

Create future EnergyPlus Weather files using CMIP6 data

blik • Rank 11.0 • Science 49%

Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.

functionalplus • Rank 16.0 • Science 44%

Functional Programming Library for C++. Write concise and readable C++ code.

@stdlib/datasets-harrison-boston-house-prices-corrected • Rank 3.0 • Science 57%

A (corrected) dataset derived from information collected by the US Census Service concerning housing in Boston, Massachusetts (1978).

@stdlib/stats-base-snanstdevwd • Rank 3.0 • Science 57%

Calculate the standard deviation of a single-precision floating-point strided array ignoring NaN values and using Welford's algorithm.

pathogenseq • Rank 3.0 • Science 57%

Pathogen whole genome sequence (WGS) data analysis pipeline

particle_conversion • Rank 3.0 • Science 57%

Transient ODE Solver of heterogeneous particle conversion processes for combustion or gasification processes

@stdlib/stats-base-sstdevwd • Rank 3.0 • Science 57%

Calculate the standard deviation of a single-precision floating-point strided array using Welford's algorithm.

phepy • Rank 3.0 • Science 57%

Intuitive evaluation of out-of-distribution detectors using simple toy examples.

ParallelMergeCSR • Rank 3.0 • Science 57%

Merge-based Parallel Sparse Matrix-Vector Multiplication in Julia

@stdlib/blas-ext-base-snansumkbn2 • Rank 3.0 • Science 57%

Calculate the sum of single-precision floating-point strided array elements, ignoring NaN values and using a second-order iterative Kahan–Babuška algorithm.

bayes-prereg • Rank 6.0 • Science 54%

FdeSolver • Rank 6.0 • Science 54%

FdeSolver.jl: A Julia package for the numerical solution of fractional differential equations (FDEs) as well as systems of equations.

uk.ac.cam.ch.wwmm.oscar • Rank 11.0 • Science 49%

OSCAR (Open Source Chemistry Analysis Routines) is an open source extensible system for the automated annotation of chemistry in scientific articles.

https://github.com/coin-or/ipopt • Rank 11.0 • Science 49%

COIN-OR Interior Point Optimizer IPOPT

pypsa-ariadne • Rank 6.0 • Science 54%

🛑 THIS REPOSITORY IS DEPRECATED 🟢 The story continues at PyPSA-DE High resolution, sector-coupled model of the German Energy System

BasicLU • Rank 6.0 • Science 54%

A Julia Interface to BasicLU

https://github.com/cbib/virhunter • Rank 6.0 • Science 54%

Deep Learning method for novel virus detection in sequencing data

epidemics • Rank 6.0 • Science 54%

A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.

sgvb-psd • Rank 6.0 • Science 54%

Multivariate PSD estimation using VI (https://arxiv.org/abs/2409.13224v1)

vmrseq • Rank 10.9 • Science 49%

An R package for detecting cell-to-cell variably methylated regions (VMRs) from single-cell bisulfite sequencing leveraging probabilistic models.

welib • Rank 10.9 • Science 49%

Wind energy library, python and matlab tools for wind turbines analyses

openet-ssebop • Rank 10.9 • Science 49%

Earth Engine SSEBop ET Model

https://github.com/althonos/mini3di • Rank 10.9 • Science 49%

A NumPy port of the foldseek code for encoding protein structures to 3di.

lpdaac-data-resources • Rank 5.9 • Science 54%

This repository is a place to find data user resources that demonstrate how to use LP DAAC tools, services, and data.

uapca • Rank 5.9 • Science 54%

Uncertainty-aware principal component analysis.

nbgitpuller-link • Rank 5.9 • Science 54%

Generate an nbgitpuller link through a CLI

mitoClone2 • Rank 10.9 • Science 49%

BioC Package Version

koza • Rank 15.9 • Science 44%

Data transformation framework for LinkML data models

nzilbb-labbcat • Rank 5.9 • Science 54%

Client library for communicating with LaBB-CAT servers.

autofolio • Rank 5.9 • Science 54%

Automated Algorithm Selection with Hyperparameter Optimization

urial • Rank 5.9 • Science 54%

Urial (URI Addition tooL) intelligently updates URIs stored in Finder comments of macOS files

vsp • Rank 10.9 • Science 49%

Vintage Sparse PCA for Semi-Parametric Network Analysis

thesis • Rank 2.9 • Science 57%

Towards Transparency and Open Science: A Principled Perspective on Computational Reproducibility and Preregistration

@stdlib/stats-base-svariancetk • Rank 2.9 • Science 57%

Calculate the variance of a single-precision floating-point strided array using a one-pass textbook algorithm.

websites-screenshoter • Rank 2.9 • Science 57%

A project to generate windows content for placement-retrieval tasks

@stdlib/blas-ext-base-gcusumpw • Rank 2.9 • Science 57%

Calculate the cumulative sum of strided array elements using pairwise summation.

eqcorrscan • Rank 13.9 • Science 46%

Earthquake detection and analysis in Python.

hockeystick • Rank 10.9 • Science 49%

Download and Visualize Essential Global Heating Data in R

https://github.com/bojarlab/candycrunch • Rank 10.9 • Science 49%

Predicting glycan structure from LC-MS/MS data

cloud-api-adaptor • Rank 15.9 • Science 44%

Ability to create Kata pods using cloud provider APIs aka the peer-pods approach

@hhhtj/draw.io • Rank 15.9 • Science 44%

draw.io is a JavaScript, client-side editor for general diagramming.

ecology-workshop • Rank 5.9 • Science 54%

Ecology Workshop Overview

fire_studio • Rank 5.9 • Science 54%

Movie Making Utilities for FIRE simulations

https://github.com/juliagaussianprocesses/abstractgps.jl • Rank 13.8 • Science 46%

Abstract types and methods for Gaussian Processes.