GitHub
orthanc-book
This is a read-only mirror of https://hg.orthanc-server.com/orthanc-book/
datacite_value-parser
A short Jupyter Notebook to parse DataCite Values via REST API for Statistics
des_rap_book
Step-by-step guide for building Python and R simulation models as part of a reproducible analytical pipeline (RAP).
softwarecitationtestrepo
Software citation test repo part of SURF week 2022/05/11
firebench
FireBench is a Python library designed for the systematic benchmarking and inter-comparison of fire models.
hiilonsetdetection
Reproducibility code for the ISMIR 2025 paper "Towards Human-in-the-Loop Onset Detection: A Transfer Learning Approach for Maracatu"
stats-strided-dvariancepn
Calculate the variance of a double-precision floating-point strided array using a two-pass algorithm.
2016-11-03-nsbe
SWC Workshop: NSBE Professional Development conference in Norfolk, VA
pyspex
pySpex contains software for SPEXone L0->L1A processing of OCAL and inflight measurements.
tumourevo
Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)
brats
Providing top performing algorithms from the Brain Tumor Segmentation (BraTS) challenges.
asreview-dory
Official extension for ASReview LAB enabling state-of-the-art NLP models with dense embeddings and deep learning architectures. Ideal for systematic reviews where lightweight models fall short.
https://github.com/demianhj/matterport
Matterport3D is a pretty awesome dataset for RGB-D machine learning tasks :)
https://github.com/broadinstitute/regional_missense_constraint
Code to calculate regional missense constraint
org-website
This is the lab-website-template based website for the Lücken lab at the Computational Health Center at Helmholtz Munich.
inverseproblemsolvers
A collection of python codes based on numpy and numba that compute the solution to A x =b
cold-spray-macroscopic-simulator
GitHub repository of the work completed during my 6-month internship on modeling and simulating the Cold Spray process.
sciview
sciview is a tool for visualization and interaction with ND image and mesh data
Feature-augmented_Traffic_Attack_Detection_Based_on_UNSW-NB15_Dataset
Feature-augmented Traffic Attack Detection Based on UNSW-NB15 Dataset.
NonuniformFFTs
Yet another package for computing multidimensional non-uniform fast Fourier transforms (NUFFTs) in Julia
repulsor
A package for handling tangent-point energy and other nonlocal energies.
tomte
A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient
anova-with-flexible-emmeans
This Shiny app performs ANOVA (Type I/II/III) and EMMEANS analyses on uploaded Excel data.
bioregion
:package: An R package compiling all steps of a bioregionalization workflow
offenses_data
Demographics and offenses of California's prison population acquired by Redo.io through public records laws
torchsom
TorchSOM is a PyTorch-based library for training Self-Organizing Maps (SOMs), a type of unsupervised learning algorithm used for clustering and dimensionality reduction. Designed for scalability and ease of use, this implementation is optimized for large-scale data.
https://github.com/demianhj/generative-models
Generative Models by Stability AI
hogpp
Fast computation of rectangular histogram of oriented gradients (R-HOG) features using integral histogram
@stdlib/random-streams-randi
Create a readable stream for generating pseudorandom numbers having integer values.
wisio
Analyze, visualize, and understand I/O performance issues in HPC workflows
modalities
Modalities, a PyTorch-native framework for distributed and reproducible foundation model training.
verlab-segmentation
This method introduces a novel methodology for the partitioning of the social space associated with arbitrary groups of individuals into approachable regions.
facts
Repository for the article in the online magazine Data Science Collective.
https://github.com/demichie/peaklocator_1.0
web application to analyze and compare spatial grid files
eisca
A single-cell RNA-seq pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.
avdeepfake1m
[ACM MM Award] AV-Deepfake1M: A Large-Scale LLM-Driven Audio-Visual Deepfake Dataset
https://github.com/demichie/nlerosion
2D numerical model for the temporal evolution of simple landforms such as cinder cones by nonlinear diffusive processes
frugally-deep
A lightweight header-only library for using Keras (TensorFlow) models in C++.
elfen
A python package to efficiently extract linguistic features for text/NLP datasets
sefo
An Octave package for generating probabilistic forecasts of weather quantities
lang-gle
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Irish language
maxfitstoolkit
This collection of Windows command-line utilities is designed for manipulating FITS files, primarily to streamline photometry data reduction with IRIS, a free astronomical image processing software. Currently, the package assists in building calibration master frames and preparing calibrated science images for photometry in AstroImageJ.
https://github.com/dcbr/pyvista
3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)
3dcap-md-gen
Scripts for exporting scanning metadata as described in the publication "Metadata Schema and Ontology for Archaeological Object Documentation including 3D Imaging (AOD-3DI)"
ensemblecontrolsimulation
Supplementary code for the manuscript: Convergence rates for ensemble-based solutions to optimal control of uncertain dynamical systems