GitHub
spopt
spopt: a python package for solving spatial optimization problems in PySAL - Published in JOSS (2022)
simstudy
simstudy: Illuminating research methods through data generation - Published in JOSS (2020)
HyperCoast
HyperCoast: A Python Package for Visualizing and Analyzing Hyperspectral Data in Coastal Environments - Published in JOSS (2024)
Visualizations with statistical details
Visualizations with statistical details: The 'ggstatsplot' approach - Published in JOSS (2021)
'Spectrum'
'Spectrum': Spectral Analysis in Python - Published in JOSS (2017)
spaghetti
spaghetti: spatial network analysis in PySAL - Published in JOSS (2021)
Confidence Intervals for Random Forests in Python
Confidence Intervals for Random Forests in Python - Published in JOSS (2017)
PsychroLib
PsychroLib: a library of psychrometric functions to calculate thermodynamic properties of air - Published in JOSS (2019)
ggalluvial
ggalluvial: Layered Grammar for Alluvial Plots - Published in JOSS (2020)
mpl-interactions
mpl-interactions: A Python Package for Interactive Matplotlib Figures - Published in JOSS (2024)
splot - visual analytics for spatial statistics
splot - visual analytics for spatial statistics - Published in JOSS (2020)
pylustrator
pylustrator: code generation for reproducible figures for publication - Published in JOSS (2020)
Augmenty
Augmenty: A Python Library for Structured Text Augmentation - Published in JOSS (2024)
textnets
textnets: A Python package for text analysis with networks - Published in JOSS (2020)
Ripser.py
Ripser.py: A Lean Persistent Homology Library for Python - Published in JOSS (2018)
Talisman
Talisman: a JavaScript archive of fuzzy matching, information retrieval and record linkage building blocks - Published in JOSS (2020)
osmdata
osmdata - Published in JOSS (2017)
PowerAPI
PowerAPI: A Python framework for building software-defined power meters - Published in JOSS (2024)
NOMAD CAMELS
NOMAD CAMELS: Configurable Application for Measurements, Experiments and Laboratory Systems - Published in JOSS (2024)
CCA-Zoo
CCA-Zoo: A collection of Regularized, Deep Learning based, Kernel, and Probabilistic CCA methods in a scikit-learn style framework - Published in JOSS (2021)
TE-dependent analysis of multi-echo fMRI with tedana
TE-dependent analysis of multi-echo fMRI with tedana - Published in JOSS (2021)
pymatgen-analysis-defects
pymatgen-analysis-defects: A Python package for analyzing point defects in crystalline materials - Published in JOSS (2024)
Jupyter Scatter
Jupyter Scatter: Interactive Exploration of Large-Scale Datasets - Published in JOSS (2024)
Caustics
Caustics: A Python Package for Accelerated Strong Gravitational Lensing Simulations - Published in JOSS (2024)
matador
matador: a Python library for analysing, curating and performing high-throughput density-functional theory calculations - Published in JOSS (2020)
multipers
multipers: Multiparameter Persistence for Machine Learning - Published in JOSS (2024)
PyAutoGalaxy
PyAutoGalaxy: Open-Source Multiwavelength Galaxy Structure & Morphology - Published in JOSS (2023)
ssdtools v2
ssdtools v2: An R package to fit Species Sensitivity Distributions - Published in JOSS (2025)
Collaborative Container Modules with Singularity Registry HPC
Collaborative Container Modules with Singularity Registry HPC - Published in JOSS (2021)
Netwulf
Netwulf: Interactive visualization of networks in Python - Published in JOSS (2019)
MNE-ICALabel
MNE-ICALabel: Automatically annotating ICA components with ICLabel in Python - Published in JOSS (2022)
Dolphin
Dolphin: A Python package for large-scale InSAR PS/DS processing - Published in JOSS (2024)
HPX - The C++ Standard Library for Parallelism and Concurrency
HPX - The C++ Standard Library for Parallelism and Concurrency - Published in JOSS (2020)
PVGeo
PVGeo: an open-source Python package for geoscientific visualization in VTK and ParaView - Published in JOSS (2019)
Sports2D
Sports2D: Compute 2D human pose and angles from a video or a webcam - Published in JOSS (2024)
The Python Sky Model 3 software
The Python Sky Model 3 software - Published in JOSS (2021)
The Walrus
The Walrus: a library for the calculation of hafnians, Hermite polynomials and Gaussian boson sampling - Published in JOSS (2019)
Easy SimAuto (ESA)
Easy SimAuto (ESA): A Python Package that Simplifies Interacting with PowerWorld Simulator - Published in JOSS (2020)
MontePy
MontePy: a Python library for reading, editing, and writing MCNP input files. - Published in JOSS (2025)
HNN-core
HNN-core: A Python software for cellular and circuit-level interpretation of human MEG/EEG - Published in JOSS (2023)
GNOLL
GNOLL: Efficient Multi-Lingual Software for Real-World Dice Notation and Extensions - Published in JOSS (2023)
eyecite
eyecite: A tool for parsing legal citations - Published in JOSS (2021)
ADIOS4DOLFINx
ADIOS4DOLFINx: A framework for checkpointing in FEniCS - Published in JOSS (2024)
PyClustering
PyClustering: Data Mining Library - Published in JOSS (2019)
UXsim
UXsim: lightweight mesoscopic traffic flow simulator in pure Python - Published in JOSS (2025)
pyuca
pyuca: a Python implementation of the Unicode Collation Algorithm - Published in JOSS (2016)
pynucastro
pynucastro: an interface to nuclear reaction rates and code generator for reaction network equations - Published in JOSS (2018)
New developments in PySDM and PySDM-examples v2
New developments in PySDM and PySDM-examples v2: collisional breakup, immersion freezing, dry aerosol initialization, and adaptive time-stepping - Published in JOSS (2023)
GlobalSensitivity.jl
GlobalSensitivity.jl: Performant and Parallel Global Sensitivity Analysis with Julia - Published in JOSS (2022)
Additive Bayesian Networks
Additive Bayesian Networks - Published in JOSS (2024)
pyuvdata v3
pyuvdata v3: an interface for astronomical interferometric data sets in Python - Published in JOSS (2025)
smol
smol: A Python package for cluster expansions and beyond - Published in JOSS (2022)
pyro
pyro: a framework for hydrodynamics explorations and prototyping - Published in JOSS (2019)
Copulas.jl
Copulas.jl: A fully Distributions.jl-compliant copula package - Published in JOSS (2024)
DelaunayTriangulation.jl
DelaunayTriangulation.jl: A Julia package for Delaunay triangulations and Voronoi tessellations in the plane - Published in JOSS (2024)
Generating synthetic star catalogs from simulated data for next-gen observatories with py-ananke
Generating synthetic star catalogs from simulated data for next-gen observatories with py-ananke - Published in JOSS (2024)
grlc
grlc: the git repository linked data API constructor. - Published in JOSS (2021)
movement_primitives
movement_primitives: Imitation Learning of Cartesian Motion with Movement Primitives - Published in JOSS (2024)
Gibbs Sea Water Oceanographic Toolbox of TEOS-10 implemented in Rust
Gibbs Sea Water Oceanographic Toolbox of TEOS-10 implemented in Rust - Published in JOSS (2024)
netrankr
netrankr: An R package for total, partial, and probabilistic rankings in networks - Published in JOSS (2022)
SCALib
SCALib: A Side-Channel Analysis Library - Published in JOSS (2023)
hIPPYlib
hIPPYlib: An Extensible Software Framework for Large-Scale Inverse Problems - Published in JOSS (2018)
Atramhasis
Atramhasis: An online SKOS vocabulary editor - Published in JOSS (2023)
Symfem
Symfem: a symbolic finite element definition library - Published in JOSS (2021)
datawizard
datawizard: An R Package for Easy Data Preparation and Statistical Transformations - Published in JOSS (2022)
phasespace
phasespace: n-body phase space generation in Python - Published in JOSS (2019)
SMACT
SMACT: Semiconducting Materials by Analogy and Chemical Theory - Published in JOSS (2019)
GemGIS - Spatial Data Processing for Geomodeling
GemGIS - Spatial Data Processing for Geomodeling - Published in JOSS (2022)
ncompare
ncompare: A Python package for comparing netCDF structures - Published in JOSS (2024)
TESPy
TESPy: Thermal Engineering Systems in Python - Published in JOSS (2020)
volesti
volesti: A C++ library for sampling and volume computation on convex bodies - Published in JOSS (2025)
colorspace
colorspace: A Python Toolbox for Manipulating and Assessing Colors and Palettes - Published in JOSS (2024)
wrenfold
wrenfold: Symbolic code generation for robotics - Published in JOSS (2025)
VILLASnode
VILLASnode: An Open-Source Real-time Multi-protocol Gateway - Published in JOSS (2025)
PyMedPhys
PyMedPhys: A community effort to develop an open, Python-based standard library for medical physics applications - Published in JOSS (2022)
pentapy
pentapy: A Python toolbox for pentadiagonal linear systems - Published in JOSS (2019)
DeepHyper
DeepHyper: A Python Package for Massively Parallel Hyperparameter Optimization in Machine Learning - Published in JOSS (2025)
DeepRiver
DeepRiver: A Deep Learning Library for Data Streams - Published in JOSS (2025)
GWSurrogate
GWSurrogate: A Python package for gravitational wave surrogate models - Published in JOSS (2025)
PyExperimenter
PyExperimenter: Easily distribute experiments and track results - Published in JOSS (2023)
alv
alv: a console-based viewer for molecular sequence alignments - Published in JOSS (2018)
FiLiP
FiLiP: A python software development kit (SDK) for accelerating the development of services based on FIWARE IoT platform - Published in JOSS (2024)
otoole
otoole: OSeMOSYS Tools for Energy Work - Published in JOSS (2023)
xagg
xagg: A Python package to aggregate gridded data onto polygons - Published in JOSS (2024)
GWPopulation
GWPopulation: Hardware agnostic population inference for compact binaries and beyond - Published in JOSS (2025)
pyCSEP
pyCSEP: A Python Toolkit For Earthquake Forecast Developers - Published in JOSS (2022)
qnm
qnm: A Python package for calculating Kerr quasinormal modes, separation constants, and spherical-spheroidal mixing coefficients - Published in JOSS (2019)
PyCUTEst
PyCUTEst: an open source Python package of optimization test problems - Published in JOSS (2022)
traffic, a toolbox for processing and analysing air traffic data
traffic, a toolbox for processing and analysing air traffic data - Published in JOSS (2019)
starfish
starfish: scalable pipelines for image-based transcriptomics - Published in JOSS (2021)
dymos
dymos: A Python package for optimal control of multidisciplinary systems - Published in JOSS (2021)
