GitHub
https://github.com/brainglobe/brainreg-napari
Automated 3D brain registration in napari with support for multiple species and atlases.
https://github.com/ctriermaansson/dnafusion
Identification of gene-fusions, including EML4-ALK
stk
The STK is a (not so) Small Toolbox for Kriging. Its primary focus is on the interpolation/regression technique known as kriging, which is very closely related to Splines and Radial Basis Functions, and can be interpreted as a non-parametric Bayesian method using a Gaussian Process (GP) prior.
@digitallinguistics/scription2dlx
A JavaScript library that converts scription text files to the Data Format for Digital Linguistics
https://github.com/althonos/nafcodec
Rust coder/decoder for Nucleotide Archival Format (NAF) files.
https://github.com/cadet/rdm-example-simulated-moving-bed
CADET case study from paper: Efficient numerical simulation of simulated moving bed chromatography with a single-column solver (He et al.)
@stdlib/stats-base-snanstdevch
Calculate the standard deviation of a single-precision floating-point strided array ignoring NaN values and using a one-pass trial mean algorithm.
@stdlib/blas-ext-base-dsort2sh
Simultaneously sort two double-precision floating-point strided arrays based on the sort order of the first array using Shellsort.
sitreg
Deep learning intra-modality image registration arhitecture fulfilling strict symmetry properties
@stdlib/stats-base-sstdevyc
Calculate the standard deviation of a single-precision floating-point strided array using a one-pass algorithm proposed by Youngs and Cramer.
@stdlib/blas-ext-base-sapxsumkbn2
Add a constant to each single-precision floating-point strided array element and compute the sum using a second-order iterative Kahan–Babuška algorithm.
biovalidator
JSON validator derived from AJV supporting ontology and taxonomy validation.
pycirclize
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
https://github.com/cytomining/copairs
Find profile pairs and compute metrics between them.
pygpsclient
Python Graphical GPS Client Application supporting NMEA, UBX, SBF, RTCM3, NTRIP & SPARTN Protocols
https://github.com/bactopia/bactopia-py
A Python package for working with Bactopia
bikenwgrowth
Source code for the paper "Growing urban bicycle networks", exploring algorithmically the limitations of urban bicycle network growth
@stdlib/stats-base-nanstdevyc
Calculate the standard deviation of a strided array ignoring NaN values and using a one-pass algorithm proposed by Youngs and Cramer.
@stdlib/stats-base-dsvariancepn
Calculate the variance of a single-precision floating-point strided array using a two-pass algorithm with extended accumulation and returning an extended precision result.
@stdlib/stats-base-dnanstdevwd
Calculate the standard deviation of a double-precision floating-point strided array ignoring NaN values and using Welford's algorithm.
@stdlib/stats-base-dnanstdevpn
Calculate the standard deviation of a double-precision floating-point strided array ignoring NaN values and using a two-pass algorithm.
@stdlib/stats-base-dsemwd
Calculate the standard error of the mean for a double-precision floating-point strided array using Welford's algorithm.
@stdlib/stats-base-snanstdevyc
Calculate the standard deviation of a single-precision floating-point strided array ignoring NaN values and using a one-pass algorithm proposed by Youngs and Cramer.
functionalplus
Functional Programming Library for C++. Write concise and readable C++ code.
@stdlib/stats-base-sstdevwd
Calculate the standard deviation of a single-precision floating-point strided array using Welford's algorithm.
phepy
Intuitive evaluation of out-of-distribution detectors using simple toy examples.
particle_conversion
Transient ODE Solver of heterogeneous particle conversion processes for combustion or gasification processes
ParallelMergeCSR
Merge-based Parallel Sparse Matrix-Vector Multiplication in Julia
@stdlib/stats-base-snanstdevwd
Calculate the standard deviation of a single-precision floating-point strided array ignoring NaN values and using Welford's algorithm.
@stdlib/blas-ext-base-snansumkbn2
Calculate the sum of single-precision floating-point strided array elements, ignoring NaN values and using a second-order iterative Kahan–Babuška algorithm.
@stdlib/datasets-harrison-boston-house-prices-corrected
A (corrected) dataset derived from information collected by the US Census Service concerning housing in Boston, Massachusetts (1978).
FdeSolver
FdeSolver.jl: A Julia package for the numerical solution of fractional differential equations (FDEs) as well as systems of equations.
uk.ac.cam.ch.wwmm.oscar
OSCAR (Open Source Chemistry Analysis Routines) is an open source extensible system for the automated annotation of chemistry in scientific articles.
pypsa-ariadne
🛑 THIS REPOSITORY IS DEPRECATED 🟢 The story continues at PyPSA-DE High resolution, sector-coupled model of the German Energy System
https://github.com/cbib/virhunter
Deep Learning method for novel virus detection in sequencing data
epidemics
A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.
sgvb-psd
Multivariate PSD estimation using VI (https://arxiv.org/abs/2409.13224v1)
vmrseq
An R package for detecting cell-to-cell variably methylated regions (VMRs) from single-cell bisulfite sequencing leveraging probabilistic models.
https://github.com/althonos/mini3di
A NumPy port of the foldseek code for encoding protein structures to 3di.
lpdaac-data-resources
This repository is a place to find data user resources that demonstrate how to use LP DAAC tools, services, and data.
thesis
Towards Transparency and Open Science: A Principled Perspective on Computational Reproducibility and Preregistration
@stdlib/stats-base-svariancetk
Calculate the variance of a single-precision floating-point strided array using a one-pass textbook algorithm.
@stdlib/blas-ext-base-gcusumpw
Calculate the cumulative sum of strided array elements using pairwise summation.
websites-screenshoter
A project to generate windows content for placement-retrieval tasks
https://github.com/bojarlab/candycrunch
Predicting glycan structure from LC-MS/MS data
cloud-api-adaptor
Ability to create Kata pods using cloud provider APIs aka the peer-pods approach
@hhhtj/draw.io
draw.io is a JavaScript, client-side editor for general diagramming.
https://github.com/juliagaussianprocesses/abstractgps.jl
Abstract types and methods for Gaussian Processes.
MATLABDiffEq
Common interface bindings for the MATLAB ODE solvers via MATLAB.jl for the SciML Scientific Machine Learning ecosystem
@stdlib/stats-base-snanvarianceyc
Calculate the variance of a single-precision floating-point strided array ignoring NaN values and using a one-pass algorithm proposed by Youngs and Cramer.
diffeqdevdocs.jl
Developer documentation for the SciML scientific machine learning ecosystem's differential equation solvers
ntpoly
A massively parallel library for computing the functions of sparse matrices.
poems
Pattern-oriented ensemble modelling and simulation (with spatially explicit populations)
@stdlib/blas-ext-base-snansumkbn
Calculate the sum of single-precision floating-point strided array elements, ignoring NaN values and using an improved Kahan–Babuška algorithm.
@stdlib/stats-base-dnanstdevtk
Calculate the standard deviation of a double-precision floating-point strided array ignoring NaN values and using a one-pass textbook algorithm.
belief-localization
This repository includes code for the paper "Does Localization Inform Editing? Surprising Differences in Where Knowledge Is Stored vs. Can Be Injected in Language Models."
fortls
Automatic Processing of Terrestrial-Based Technologies Point Cloud Data for Forestry Purposes
graphtage
A semantic diff utility and library for tree-like files such as JSON, JSON5, XML, HTML, YAML, and CSV.
geometricintegratorsdiffeq.jl
Wrappers for GeometricIntegrators.jl into the SciML common interface for scientific machine learning (SciML)