GitHub
metagenomics_snakemake
Snakemake-based pipeline for metagenomics classification. Currently support short-reads Illumina Sequences and long-reads ONT Sequences.
https://github.com/dcavar/thec_deu
The Hoosier Ellipsis Corpus (THEC) - German Sub-corpus (thec_deu)
https://github.com/dcavar/antisemitism_datathon_hackathon_2024
Code and data for the antisemitism hackathon and datathon 2024 at Indiana University
docker-app-meme-pam-analyzer
An application designed for analyzing meme images, utilizing deep learning techniques to analyze the visual and semantic representation of meme images, and employing clustering algorithms to organize these memes.
https://github.com/gchism94/research-compendiums-list
Current list of published research compendiums, including DOIs for each compendium, and associated datasets and publications
pppps2pc
Extremely simple tool to enable the ParaParaParadise PS2 controller on a PC.
https://github.com/gchism94/rrresearchacce20
Materials associated with ACCE DTP course on Reproducible Research Data & Project Management in R
https://github.com/gchism94/rrtools
rrtools: Tools for Writing Reproducible Research in R
rbcodes
An assortment of astrophysical codes mainly for analysis of circumgalactic medium observations.
don-t-die
A social network designed to tell your friends and loved ones things you forget to say while they are alive.
https://github.com/chen-yang-liu/rscama
[IEEE GRSL 2024 🔥] RSCaMa: Remote Sensing Image Change Captioning with State Space Model
qkt_benchmarking
Source code for reproducibility of experiments at https://doi.org/10.48550/arXiv.2408.10274
simparameterestimation.jl
Julia package implementing parameter estimation for structured illumination microscopy patterns
spatialvpt
Segmentation and QC workflow for MERSCOPE using vizgen-postprocessing tool
timelapsefromprompt
TimelapseFromPrompt is a tool for automatically generating object-centric timelapse videos using natural language prompts.
mri-education-resources
Resources for learning the principles of magnetic resonance imaging (MRI)
ti-1-pmg-cc-t-20231-tiaw-desvalorizacao-de-artistas
ti-1-pmg-cc-t-20231-tiaw-desvalorizacao-de-artistas created by GitHub Classroom
stats-base-dists-planck-entropy
Planck (discrete exponential) distribution differential entropy.
lapack-base-dlaset
Set the off-diagonal elements and the diagonal elements of a double-precision floating-point matrix to specified values.
cape-k-wildfires
Cookbook for the wildfires observed at CAPE-k from the CAPE-k student workshop
https://github.com/btschwertfeger/infinity-grid
Multi-Exchange Infinity Grid Trading Bot
llvmbpf-nvptx
This branch has been merged into the https://github.com/eunomia-bpf/llvmbpf
fair_ebaii_n2
Science ouverte et principes FAIR dans un projet de bioinformatique
intro_to_ai_ml_orig
Introduction to Artificial Intelligence and Machine Learning
pypsa-de
PyPSA-DE: High resolution, sector-coupled model of the German Energy System
pyvisgen
Simulate observations with radio interferometers and generate complex visibilities.
displacement-forecasting-toolbox-arcgispro
An interdisciplinary integration of geospatial and DL techniques underscores the potential for advanced monitoring of Earth surface dynamics.
https://github.com/dcavar/self-attentive-parser
High-accuracy NLP parser with models for 11 languages.
https://github.com/dcavar/flair
A very simple framework for state-of-the-art Natural Language Processing (NLP)
pyslam
pySLAM is a Python-based Visual SLAM pipeline that supports monocular, stereo, and RGB-D cameras. It offers a wide range of modern local and global features, multiple loop-closing strategies, a volumetric reconstruction pipeline, integration of depth prediction models, and semantic segmentation for enhanced scene understanding.
ocean-nitrogen-isotopes-box-models
Prognostic ocean model of nitrate isotopes (Fripiat et al., 2023, GBC, www...)
multi-variate-parallel-transformer
Repository for paper "A foundation model with multi-variate parallel attention to generate neuronal activity"
powerfit-em
Rigid body fitting of atomic strucures in cryo-electron microscopy density maps
scnanoseq
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
metrx
A library containing a collection of distance and similarity measures for data analysis
blas-base-matrix-orientation-str2enum
Return the enumeration constant associated with a matrix orientation.
de-aop-23
Data & R code for the paper: "Apnea of Prematurity induces short and long-term development-related transcriptional changes in the murine cerebellum"
reefnet-pytorch-models
This repository provides modular, split-aware PyTorch Dataset classes used in the ReefNet project for coral reef image classification. Designed to integrate with timm, it supports large-scale genus-level training and evaluation on Red Sea-specific benchmarks.
learnmcp-xapi
An open-source MCP (Model Context Protocol) server that enables AI agents to record and retrieve learning activities through xAPI-compliant Learning Record Stores
hourvideo
[NeurIPS 2024] Official code for HourVideo: 1-Hour Video Language Understanding
oceananalyticslab
Experimentation and development of production frameworks for Ocean Science algorithms
sanivult
Evaluating the impacts of the outbreak of a Bovine Spongiform Encephalopathy epidemic on the demographic and population dynamics of one of the world's largest colonies of the Eurasian Griffon vulture (Gyps fulvus).