LimitedLDLFactorizations • Rank 11.0 • Science 67%

Limited-Memory Factorization of Symmetric Matrices

ray-optics • Rank 11.0 • Science 67%

A web app for creating and simulating 2D geometric optical scenes, with a gallery of (interactive) demos.

DIVAnd • Rank 11.0 • Science 67%

DIVAnd performs an n-dimensional variational analysis of arbitrarily located observations

mbgdml • Rank 3.0 • Science 75%

Create, use, and analyze machine learning potentials within the many-body expansion framework.

pycid • Rank 11.0 • Science 67%

Library for graphical models of decision making, based on pgmpy and networkx

ANCOMBC • Rank 19.0 • Science 59%

Differential abundance (DA) and correlation analyses for microbial absolute abundance data

ImplicitDiscreteSolve • Rank 24.0 • Science 54%

High performance ordinary differential equation (ODE) and differential-algebraic equation (DAE) solvers, including neural ordinary differential equations (neural ODEs) and scientific machine learning (SciML)

dftbplus • Rank 11.0 • Science 67%

DFTB+ general package for performing fast atomistic simulations

https://github.com/cta-observatory/ctapipe • Rank 18.9 • Science 59%

Low-level data processing pipeline software for CTAO or similar arrays of Imaging Atmospheric Cherenkov Telescopes

PyNomaly — Peer-reviewed • Rank 18.9 • Science 59%

PyNomaly: Anomaly detection using Local Outlier Probabilities (LoOP). - Published in JOSS (2018)

ekonlpy • Rank 10.9 • Science 67%

Korean NLP Python Library for Economic Analysis

yascheduler • Rank 10.9 • Science 67%

Yet another cloud computing scheduler for the high-throughput cloud scientific simulations

sarek • Rank 10.9 • Science 67%

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

SolidStateDetectors • Rank 10.9 • Science 67%

Solid state detector field and charge drift simulation in Julia

tradeSeq • Rank 18.9 • Science 59%

TRAjectory-based Differential Expression analysis for SEQuencing data

pyqsp • Rank 13.9 • Science 64%

Python quantum signal processing

pixi • Rank 23.9 • Science 54%

Package management made easy

msmpathfinder • Rank 2.9 • Science 75%

Finding pathways from an Markov State Model

conflowgen • Rank 10.9 • Science 67%

A generator for synthetic container flows at maritime container terminals with a focus on yard operations

pyhelpers • Rank 10.9 • Science 67%

PyHelpers: An open-source toolkit for facilitating Python users' data manipulation tasks

clean_rawdata • Rank 5.9 • Science 72%

Cleaning Raw EEG data

pyfactxx • Rank 10.9 • Science 67%

Python bindings for upgraded FaCT++ description logic reasoner

lassonet • Rank 13.9 • Science 64%

Feature selection in neural networks

python-cmethods • Rank 10.9 • Science 67%

A collection of bias correction techniques written in Python - for climate sciences.

fracridge • Rank 10.8 • Science 67%

Fractional ridge regression

soundscapy • Rank 10.8 • Science 67%

A python library for soundscape assessments

clustermq • Rank 18.8 • Science 59%

R package to send function calls as jobs on LSF, SGE, Slurm, PBS/Torque, or each via SSH

catalyst • Rank 23.8 • Science 54%

Accelerated deep learning R&D

stone-soup • Rank 10.8 • Science 67%

A software project to provide the target tracking community with a framework for the development and testing of tracking algorithms.

TECA • Rank 10.8 • Science 67%

TECA, theToolkit for Extreme Climate Analysis, contains a collection of climate anlysis algorithms targetted at extreme event detection and analysis.

vol2birdR • Rank 10.8 • Science 67%

R package for the vol2bird algorithm: generate vertical profiles of biological signals in weather radar data

mdsuite • Rank 10.8 • Science 67%

A post-processing engine for particle simulations

scisort • Rank 10.8 • Science 67%

Sort files in research project folders in a scientific order

gpt-neox • Rank 13.8 • Science 64%

An implementation of model parallel autoregressive transformers on GPUs, based on the Megatron and DeepSpeed libraries

oxigraph • Rank 23.8 • Science 54%

SPARQL graph database

omniauth-identity • Rank 23.8 • Science 54%

A simple login and password strategy for OmniAuth.

pymbar • Rank 18.7 • Science 59%

Python implementation of the multistate Bennett acceptance ratio (MBAR)

artistools • Rank 13.7 • Science 64%

Plotting and analysis tools for ARTIS simulations

gms • Rank 10.7 • Science 67%

citeworks-cff • Rank 10.7 • Science 67%

Rust crates for citation formats and tools

numgrid • Rank 10.7 • Science 67%

Numerical integration grid for molecules.

babelstream • Rank 10.7 • Science 67%

STREAM, for lots of devices written in many programming models

bpbounds • Rank 10.7 • Science 67%

R package implementing nonparametric bounds for the ACE due to Balke and Pearl, JASA, 1997

stars_reproduction_template • Rank 0.7 • Science 77%

Template repository for assessing the computational reproducibility of simulation studies on STARS

stars-reproduce-wood-2021 • Rank 0.7 • Science 77%

Assessing the computational reproducibility of Wood et al. 2021 as part of STARS.

stars_wp1_summary • Rank 0.7 • Science 77%

Summary of the eight computational reproducibility assessments conducted as part of STARS Work Package 1. These assessed discrete-event simulation papers with models in Python and R.

dispersal-meta-analysis • Rank 0.7 • Science 77%

Paper - Physiology can predict animal activity, exploration, and dispersal

chitoolbox • Rank 0.7 • Science 77%

MATLAB toolbox for handling hyperspectral data generated by SIMS, FTIR and Raman instruments.

ecoopt • Rank 0.7 • Science 77%

vectormultibang • Rank 0.7 • Science 77%

incompact3d_plunging_criterion • Rank 0.7 • Science 77%

Plunging condition for particle-laden flows over sloping bottoms: three-dimensional turbulence-resolving simulations

stars-ciw-example • Rank 0.7 • Science 77%

A treatment simulation model implemented in CiW

attribution_springna • Rank 0.7 • Science 77%

Climate drivers of the springtime North America cooling pattern

cuquantum • Rank 20.7 • Science 57%

Home for cuQuantum Python & NVIDIA cuQuantum SDK C++ samples

https://github.com/bcallaway11/did • Rank 18.7 • Science 59%

Difference in Differences with Multiple Periods, website: https://bcallaway11.github.io/did

augmentedRCBD • Rank 10.7 • Science 67%

Analysis of Augmented Randomised Complete Block Design

tiktokapi • Rank 23.7 • Science 54%

The Unofficial TikTok API Wrapper In Python

timbertrek • Rank 10.6 • Science 67%

Explore and compare 1K+ accurate decision trees in your browser!

rsi • Rank 10.6 • Science 67%

Code for Retrieving STAC Information, addressing Repeated Spatial Infelicities and interfacing with Rsome Spectral Indices

martin • Rank 23.6 • Science 54%

Blazing fast and lightweight PostGIS, MBtiles and PMtiles tile server, tile generation, and mbtiles tooling.

pybigwig • Rank 18.6 • Science 59%

A python extension for quick access to bigWig and bigBed files

RootedTrees • Rank 10.6 • Science 67%

A collection of functionality around rooted trees to generate order conditions for Runge-Kutta methods in Julia for differential equations and scientific machine learning (SciML)

tensorflow-federated • Rank 23.6 • Science 54%

An open-source framework for machine learning and other computations on decentralized data.

cords • Rank 13.6 • Science 64%

Reduce end to end training time from days to hours (or hours to minutes), and energy requirements/costs by an order of magnitude using coresets and data selection.

MUMPS • Rank 10.6 • Science 67%

A Julia Interface to MUMPS

OpenML • Rank 18.6 • Science 59%

R package to interface with OpenML

qsharp • Rank 20.6 • Science 57%

Azure Quantum Development Kit, including the Q# programming language, resource estimator, and Quantum Katas

medusa-llm • Rank 13.6 • Science 64%

Medusa: Simple Framework for Accelerating LLM Generation with Multiple Decoding Heads

vosviewer-online • Rank 10.6 • Science 67%

VOSviewer Online is a tool for network visualization. It is a web-based version of VOSviewer, a popular tool for constructing and visualizing bibliometric networks.

genice • Rank 10.6 • Science 67%

A swiss army knife to generate proton-disordered ice structures.

deepforest • Rank 18.6 • Science 59%

Python Package for Airborne RGB machine learning

SEP — Peer-reviewed • Rank 18.6 • Science 59%

SEP: Source Extractor as a library - Published in JOSS (2016)

evodcinv • Rank 10.6 • Science 67%

Inversion of dispersion curves using Evolutionary Algorithms

shap • Rank 31.6 • Science 46%

A game theoretic approach to explain the output of any machine learning model.

gene-normalizer • Rank 13.5 • Science 64%

Services and guidelines for normalizing genes

oc_ocdm • Rank 10.5 • Science 67%

Object mapping library for manipulating RDF graphs that are compliant with the OpenCitations datamodel.

signac-flow • Rank 15.5 • Science 62%

Workflow management for signac-managed data spaces.

sweater — Peer-reviewed • Rank 10.5 • Science 67%

sweater: Speedy Word Embedding Association Test and Extras Using R - Published in JOSS (2022)

tmuxp • Rank 23.5 • Science 54%

🖥️ Session manager for tmux, built on libtmux.

mastodon.py • Rank 23.5 • Science 54%

Python wrapper for the Mastodon ( https://github.com/mastodon/mastodon/ ) API.

d3rlpy • Rank 10.5 • Science 67%

An offline deep reinforcement learning library

graphblas • Rank 10.5 • Science 67%

SuiteSparse:GraphBLAS: graph algorithms in the language of linear algebra. For production: (default) STABLE branch. Code development: ask me for the right branch before submitting a PR. video intro: https://youtu.be/Tj5y6d7FegI .

torchlpc • Rank 10.5 • Science 67%

Fast and differentiable time domain all-pole filter in PyTorch.

pandapower • Rank 23.5 • Science 54%

Convenient Power System Modelling and Analysis based on PYPOWER and pandas

eeg-positions • Rank 10.5 • Science 67%

Compute and plot standard EEG electrode positions.

epiCo • Rank 10.5 • Science 67%

R package for statistical and spatiotemporal modeling of epidemiological data for vector-borne diseases in Colombia

benchexec • Rank 18.5 • Science 59%

BenchExec: A Framework for Reliable Benchmarking and Resource Measurement

crowdstrike-falconpy • Rank 23.5 • Science 54%

The CrowdStrike Falcon SDK for Python

xbatcher • Rank 18.5 • Science 59%

Batch generation from xarray datasets

biobb-amber • Rank 10.4 • Science 67%

Biobb_amber is a BioBB category for AMBER MD package.

HELICS • Rank 18.4 • Science 59%

Hierarchical Engine for Large-scale Infrastructure Co-Simulation (HELICS)

qiskit-nature • Rank 10.4 • Science 67%

Qiskit Nature is an open-source, quantum computing, framework for solving quantum mechanical natural science problems.

tensorzero • Rank 23.4 • Science 54%

TensorZero is an open-source stack for industrial-grade LLM applications. It unifies an LLM gateway, observability, optimization, evaluation, and experimentation.

tai-e • Rank 10.4 • Science 67%

An easy-to-learn/use static analysis framework for Java

gpttrace • Rank 10.4 • Science 67%

Generate eBPF programs and tracing with ChatGPT

tensorly • Rank 23.4 • Science 54%

TensorLy: Tensor Learning in Python.

vocalpy • Rank 10.4 • Science 67%

A core package for acoustic communication research in Python

phylofisher • Rank 10.4 • Science 67%

PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datasets that consist of eukaryotic protein sequences.

dp-cgans • Rank 10.4 • Science 67%

A library to generate synthetic tabular or RDF data using Conditional Generative Adversary Networks (GANs) combined with Differential Privacy techniques.

FedData • Rank 18.4 • Science 59%

Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources