duecredit • Rank 18.4 • Science 59%

Automated collection and reporting of citations for used software/methods/datasets

chopin • Rank 10.4 • Science 67%

Computation of Spatial Data by Hierarchical and Objective Partitioning of Inputs for Parallel Processing http://doi.org/10.1016/j.softx.2025.102167

cptac • Rank 15.3 • Science 62%

Python packaging for CPTAC data

learn_prompting • Rank 13.3 • Science 64%

Prompt Engineering, Generative AI, and LLM Guide by Learn Prompting | Join our discord for the largest Prompt Engineering learning community

hummingbird-xfel • Rank 10.3 • Science 67%

Monitoring and Analysing flash X-ray imaging experiments

UnitDiskMapping • Rank 10.3 • Science 67%

Reduce several arbitrary-connectivity optimization problems into maximum independent set problems on a grid

loopy • Rank 18.3 • Science 59%

A code generator for array-based code on CPUs and GPUs

tyrannosaurus • Rank 10.3 • Science 67%

Generate beautifully modern (2021+) Python projects with seamless, GitHub-based CI/CD, Docker and Conda support, and out-of-the-box integration with >30 best-practices tools and standards.

ReSurfEMG — Peer-reviewed • Rank 10.3 • Science 67%

ReSurfEMG: A Python library for preprocessing and analysis of respiratory EMG. - Published in JOSS (2023)

ltbams • Rank 10.3 • Science 67%

Power system generation scheduling and co-simulation with dynamics.

aexpy • Rank 10.3 • Science 67%

AexPy /eikspai/ is Api EXplorer in PYthon for detecting API breaking changes in Python packages.

mqt-qubomaker • Rank 5.3 • Science 72%

A framework for the automatic generation of QUBO formulations for optimization problems.

waywiser • Rank 10.3 • Science 67%

Ergonomic tooling to assess models of spatial data

zmap • Rank 13.3 • Science 64%

ZMap is a fast single packet network scanner designed for Internet-wide network surveys.

numba-mpi • Rank 13.3 • Science 64%

Numba @jit compatible wrappers for MPI C API tested on Linux, macOS and Windows

hydrosignatures • Rank 10.2 • Science 67%

A suite of tools for computing hydrological signatures

jarvis • Rank 13.2 • Science 64%

JARVIS, a system to connect LLMs with ML community. Paper: https://arxiv.org/pdf/2303.17580.pdf

climate-learn • Rank 13.2 • Science 64%

Source code for ClimateLearn

opengeode-core • Rank 18.2 • Science 59%

Open source framework for representing and manipulating geometric models

fates • Rank 10.2 • Science 67%

repository for the Functionally Assembled Terrestrial Ecosystem Simulator (FATES)

pyfwi • Rank 10.2 • Science 67%

This repository is for PyFWI, a Python package for seismic FWI and reservoir monitoring (time-lapse FWI)

oauth2 • Rank 33.2 • Science 44%

🔐 oauth2 - A Ruby wrapper for the OAuth 2.0 Authorization Framework, including OpenID Connect (OIDC)

Bravais • Rank 10.2 • Science 67%

Tools for crystallographic symmetry analysis

appfl • Rank 13.2 • Science 64%

Advanced Privacy-Preserving Federated Learning framework

xyz2graph • Rank 10.2 • Science 67%

Convert an xyz file into a molecular graph and create a 3D visualisation of the graph.

yolov3 • Rank 13.2 • Science 64%

YOLOv3 in PyTorch > ONNX > CoreML > TFLite

amlb • Rank 13.2 • Science 64%

OpenML AutoML Benchmarking Framework

simba-uw-no-tf • Rank 18.2 • Science 59%

SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers

ClimaSeaIce.jl • Rank 10.2 • Science 67%

🧊 Coupled and stand-alone simulations of sea ice for Earth system modeling

hyfi • Rank 10.2 • Science 67%

HyFI: Hydra Fast Interface (Hydra and Pydantic based interface framework)

anomalib • Rank 23.1 • Science 54%

An anomaly detection library comprising state-of-the-art algorithms and features such as experiment management, hyper-parameter optimization, and edge inference.

ast_monitor • Rank 10.1 • Science 67%

AST-Monitor is a wearable Raspberry Pi computer for cyclists

OpenMx • Rank 20.1 • Science 57%

Repository for the OpenMx Structural Equation Modeling package

gemdat • Rank 10.1 • Science 67%

Python toolkit for molecular dynamics analysis

MicrobiotaProcess • Rank 18.1 • Science 59%

:microbe: A comprehensive R package for deep mining microbiome

tanaka • Rank 15.1 • Science 62%

Tanaka Maps with R

wavefunctioncollapse • Rank 13.1 • Science 64%

Bitmap & tilemap generation from a single example with the help of ideas from quantum mechanics

arvados • Rank 23.1 • Science 54%

An open source platform for managing and analyzing biomedical big data

prime-badges • Rank 2.1 • Science 75%

A tool to create custom badges displaying CLIME metrics

open-variant • Rank 10.1 • Science 67%

Read, parse and operate different multiple input file formats with OpenVariant

eds-scikit • Rank 10.1 • Science 67%

eds-scikit is a Python library providing tools to process and analyse OMOP data

pandas-dataclasses • Rank 10.1 • Science 67%

:zap: pandas data creation by data classes

continuum-mechanics • Rank 10.1 • Science 67%

Utilities for doing calculations in continuum mechanics.

arx • Rank 10.1 • Science 67%

ARX is a comprehensive open source data anonymization tool aiming to provide scalability and usability. It supports various anonymization techniques, methods for analyzing data quality and re-identification risks and it supports well-known privacy models, such as k-anonymity, l-diversity, t-closeness and differential privacy.

https://github.com/bluebrain/bioexplorer • Rank 10.0 • Science 67%

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

siapy • Rank 10.0 • Science 67%

🥷 A Python package for efficient processing of spectral images

neoniso • Rank 10.0 • Science 67%

R package for calibrating NEON atmospheric isotope data

semra • Rank 10.0 • Science 67%

🛣️ Semantic Mapping Reasoning Assembler (SeMRA): tooling for semantic mappings

structural_analysis • Rank 0.0 • Science 77%

Codes for the generation and analysis of molecular representations.

rdesrap_stroke • Rank 0.0 • Science 77%

Reproducible analytical pipeline (RAP) for R discrete-event simulation (DES) implementing the Stroke Capacity Planning Model from Monks et al. 2016.

2025-01-15-python-intro-hatch • Rank 0.0 • Science 77%

Based on https://github.com/librarycarpentry/lc-python-intro/

the-next-decade-of-seismic-oceanography • Rank 0.0 • Science 77%

This repository contains supporting information for the article The Next Decade of Seismic Oceanography: Possibilities, Challenges and Solutions (doi: 10.3389/fmars.2022.736693)

gw4_prize_presentation • Rank 0.0 • Science 77%

Amy Heather's presentation for the GW4 Open Research Prize 2024/25

khaled.alshamaa/ar-php • Rank 23.0 • Science 54%

Set of functionalities enable Arabic website developers to serve professional search, present and process Arabic content in PHP

spreg • Rank 18.0 • Science 59%

Spatial econometric regression in Python

pygmmis • Rank 10.0 • Science 67%

Gaussian mixture model for incomplete (missing or truncated) and noisy data

GEOquery • Rank 23.0 • Science 54%

The bridge between the NCBI Gene Expression Omnibus and Bioconductor

hijridate • Rank 20.0 • Science 57%

Accurate Hijri-Gregorian dates converter based on Umm al-Qura calendar

geotox • Rank 10.0 • Science 67%

Open-source software for connecting spatiotemporal exposure to individual and population-level risk

microeye • Rank 10.0 • Science 67%

A python toolkit for fluorescence microscopy.

travshacl • Rank 9.9 • Science 67%

A SHACL validator capable of planning the traversal and execution of the validation of a shape schema to detect violations early.

musicaiz • Rank 9.9 • Science 67%

A python framework for symbolic music generation, evaluation and analysis

libtensorflow_cc • Rank 4.9 • Science 72%

Pre-built libtensorflow_cc.so and Docker Images for TensorFlow C++ API

fao • Rank 4.9 • Science 72%

suitpy • Rank 9.9 • Science 67%

quantum-evolution-kernel • Rank 9.9 • Science 67%

A Graph Machine Learning library using Quantum Computing

pygmo • Rank 17.9 • Science 59%

A Python platform to perform parallel computations of optimisation tasks (global and local) via the asynchronous generalized island model.

mmdeploy • Rank 22.9 • Science 54%

OpenMMLab Model Deployment Framework

eko • Rank 17.9 • Science 59%

Evolution Kernel Operators

pRoloc • Rank 17.9 • Science 59%

A unifying bioinformatics framework for organelle proteomics

pyxem • Rank 17.9 • Science 59%

An open-source Python library for multi-dimensional diffraction microscopy.

oneAPI • Rank 12.9 • Science 64%

Julia support for the oneAPI programming toolkit.

dataset-phenotypes • Rank 4.9 • Science 72%

Preparatory scripts for BIDS tabular phenotypic data in large neuroimaging datasets.

biomartr • Rank 17.9 • Science 59%

Genomic Data Retrieval with R

spconv • Rank 22.9 • Science 54%

Spatial Sparse Convolution Library

io.oss84.geotools.jdbc:gt-jdbc • Rank 17.9 • Science 59%

Official GeoTools repository

ProxSDP • Rank 9.9 • Science 67%

Semidefinite programming optimization solver

pybryt • Rank 12.9 • Science 64%

Python library for pedagogical auto-assessment

oggm • Rank 17.9 • Science 59%

Open Global Glacier Model

deepchecks • Rank 22.8 • Science 54%

Deepchecks: Tests for Continuous Validation of ML Models & Data. Deepchecks is a holistic open-source solution for all of your AI & ML validation needs, enabling to thoroughly test your data and models from research to production.

dataRetrieval • Rank 19.8 • Science 57%

This R package is designed to obtain USGS or EPA water quality sample data, streamflow data, and metadata directly from web services.

msaexp • Rank 9.8 • Science 67%

Manual extraction of JWST NIRSpec spectra

cppflow • Rank 9.8 • Science 67%

Run TensorFlow models in C++ without installation and without Bazel

textgen • Rank 12.8 • Science 64%

TextGen: Implementation of Text Generation models, include LLaMA, BLOOM, GPT2, BART, T5, SongNet and so on. 文本生成模型，实现了包括LLaMA，ChatGLM，BLOOM，GPT2，Seq2Seq，BART，T5，UDA等模型的训练和预测，开箱即用。

rapidfuzz • Rank 32.8 • Science 44%

Rapid fuzzy string matching in Python using various string metrics

what_are_embeddings • Rank 9.8 • Science 67%

A deep dive into embeddings starting from fundamentals

neural-pipeline-search • Rank 12.8 • Science 64%

Neural Pipeline Search (NePS): Helps deep learning experts find the best neural pipeline.

aac-datasets • Rank 9.8 • Science 67%

Audio Captioning datasets for PyTorch.

germinationmetrics • Rank 9.8 • Science 67%

Seed Germination Indices and Curve Fitting

graspologic • Rank 22.8 • Science 54%

Python package for graph statistics

goxygen • Rank 9.8 • Science 67%

Documentation package for modular GAMS code

fcpy • Rank 1.8 • Science 75%

Feldman-Cousins Confidence Interval Calculation

catnip • Rank 1.8 • Science 75%

gsppy • Rank 9.8 • Science 67%

GSP (Generalized Sequence Pattern) algorithm in Python

fireflyalgorithm • Rank 9.8 • Science 67%

Implementation of Firefly Algorithm in Python

ai.hypergraph • Rank 9.8 • Science 67%

🧩 Shape-Safe Symbolic Differentiation with Algebraic Data Types

aeolis-python • Rank 12.8 • Science 64%

A process-based model for simulating supply-limited aeolian sediment transport

VineCopula • Rank 17.8 • Science 59%

Statistical inference of vine copulas

RNeXML • Rank 17.8 • Science 59%

Implementing semantically rich NeXML I/O in R

boxsers • Rank 9.7 • Science 67%

Python package that provides a full range of functionality to process and analyze vibrational spectra (Raman, SERS, FTIR, etc.).