ceds • Rank 8.5 • Science 67%

Community Earth atmospheric Data System (CEDS)

actinia-core • Rank 8.5 • Science 67%

Actinia Core is an open source REST API for scalable, distributed, high performance processing of geographical data that uses mainly GRASS GIS for computational tasks (DOI: https://doi.org/10.5281/zenodo.5879231) | Tutorial: https://actinia-org.github.io/actinia-core/ | Docker: https://hub.docker.com/r/mundialis/actinia-core

openfe • Rank 8.5 • Science 67%

The Open Free Energy toolkit

betaMC • Rank 8.5 • Science 67%

betaMC: Generates Monte Carlo confidence intervals for standardized regression coefficients for models fitted by lm().

slmsuite • Rank 11.5 • Science 64%

Python package for high-performance spatial light modulator (SLM) control and holography. Supports features from aberration-corrected 3D point clouds to automated Fourier-domain calibrations.

simpa • Rank 8.5 • Science 67%

The Simulation and Image Processing for Photonics and Acoustics (SIMPA) toolkit.

syntaxmaker • Rank 8.5 • Science 67%

The NLG tool for Finnish

processoptimizer • Rank 16.5 • Science 59%

A tool to optimize real world problems

SolverBenchmark • Rank 8.5 • Science 67%

Benchmark tools for solvers

ansible-collection-toolkit • Rank 8.5 • Science 67%

This Ansible collection provides production-ready Ansible roles used for providing services used in research and by research software engineers, but not exclusively.

ggsignif • Rank 21.5 • Science 54%

Easily add significance brackets to your ggplots

climate_indices • Rank 16.5 • Science 59%

Climate indices for drought monitoring

compss • Rank 8.5 • Science 67%

COMP Superscalar (COMPSs) is a framework which aims to ease the development and execution of applications for distributed infrastructures, such as Clusters, Grids and Clouds.

scanpy • Rank 26.4 • Science 49%

Single-cell analysis in Python. Scales to >100M cells.

pedbp • Rank 8.4 • Science 67%

R package for working with pediatric blood pressures based on age and height

aiida-crystal-dft • Rank 8.4 • Science 67%

AiiDA plugin for the ab initio modeling suite CRYSTAL, developed in Turin University

tasksource • Rank 11.4 • Science 64%

Datasets collection and preprocessings framework for NLP extreme multitask learning

climada_petals • Rank 8.4 • Science 67%

CLIMADA Petals generates different types of hazards and contains more specialized applications than the CLIMADA Core module https://github.com/CLIMADA-project/climada_python.

https://github.com/astropy/pytest-filter-subpackage • Rank 16.4 • Science 59%

Simple pytest plugin to allow sub-packages to test to be selected with e.g. -P io.fits,modeling

rastervision • Rank 21.4 • Science 54%

An open source library and framework for deep learning on satellite and aerial imagery.

fluidx3d • Rank 8.4 • Science 67%

The fastest and most memory efficient lattice Boltzmann CFD software, running on all GPUs and CPUs via OpenCL. Free for non-commercial use.

nplinker • Rank 11.4 • Science 64%

A python framework for microbial natural products data mining by integrating genomics and metabolomics data

glint-mask-tools • Rank 8.4 • Science 67%

Generate glint masks for RGB imagery

xugrid • Rank 16.4 • Science 59%

Xarray and unstructured grids

innvestigate • Rank 16.4 • Science 59%

A toolbox to iNNvestigate neural networks' predictions!

autogoal • Rank 8.4 • Science 67%

A Python framework for program synthesis with a focus on Automated Machine Learning.

python-icat • Rank 11.4 • Science 64%

Python interface to ICAT and IDS

broman • Rank 16.4 • Science 59%

R/broman: A package with Karl Broman's personal R code

guide • Rank 8.4 • Science 67%

Software Development Guide

cctbx • Rank 18.4 • Science 57%

Computational Crystallography Toolbox

biobb • Rank 8.4 • Science 67%

Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools.

forecast-tools • Rank 8.4 • Science 67%

forecast_tools provides fundamental tools to support the forecasting process in python

jill • Rank 8.4 • Science 67%

Command line installer of the Julia Language.

pigeons.jl • Rank 11.4 • Science 64%

Sampling from intractable distributions, with support for distributed and parallel methods

sf • Rank 26.4 • Science 49%

Simple Features for R

WatchShaker • Rank 8.4 • Science 67%

Experimental Shake Gesture Detection API for Apple Watch

openfoam-adapter • Rank 8.4 • Science 67%

OpenFOAM-preCICE adapter

mriqc • Rank 16.4 • Science 59%

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

weaver • Rank 8.4 • Science 67%

Weaver: Workflow Execution Management Service (EMS); Application, Deployment and Execution Service (ADES); OGC API - Processes; WPS; CWL Application Package

fairly • Rank 8.3 • Science 67%

A package to create, publish, and clone research datasets

pretzel • Rank 8.3 • Science 67%

Javascript full-stack framework for Big Data visualisation and analysis

ampycloud • Rank 8.3 • Science 67%

Python package to determine the sky coverage fraction and base height of cloud layers using ceilometer data

scimlbook • Rank 11.3 • Science 64%

Parallel Computing and Scientific Machine Learning (SciML): Methods and Applications (MIT 18.337J/6.338J)

beobench • Rank 8.3 • Science 67%

A toolkit providing easy and unified access to building control environments for reinforcement learning (RL). No longer actively maintained.

mlora-cli • Rank 11.3 • Science 64%

An Efficient "Factory" to Build Multiple LoRA Adapters

quantum-gates • Rank 8.3 • Science 67%

Noisy Quantum Gates model for simulating the noise of quantum devices.

theft • Rank 16.3 • Science 59%

R package for Tools for Handling Extraction of Features from Time series (theft)

pyorthoani • Rank 8.3 • Science 67%

A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.

clusttraj • Rank 8.3 • Science 67%

Python script that receives a molecular dynamics or Monte Carlo trajectory and performs agglomerative clustering to classify similar structures.

pRolocGUI • Rank 16.3 • Science 59%

Interactive visualisation and exploration of spatial proteomics data

https://github.com/althonos/lightmotif • Rank 16.3 • Science 59%

A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

alpino-query • Rank 8.3 • Science 67%

Library for creating xpath queries by example for Alpino treebanks

folium • Rank 29.3 • Science 46%

Python Data. Leaflet.js Maps.

DAISIE • Rank 16.3 • Science 59%

DAISIE

tifffile • Rank 26.3 • Science 49%

Read and write TIFF files.

Qiskit Dynamics — Peer-reviewed • Rank 8.3 • Science 67%

Qiskit Dynamics: A Python package for simulating the time dynamics of quantum systems - Published in JOSS (2023)

kikuchipy • Rank 16.3 • Science 59%

Toolbox for analysis of electron backscatter diffraction (EBSD) patterns

@phyloref/phyx • Rank 8.3 • Science 67%

Phyloreference Exchange (Phyx) library in JavaScript

python-chess • Rank 29.2 • Science 46%

A chess library for Python, with move generation and validation, PGN parsing and writing, Polyglot opening book reading, Gaviota tablebase probing, Syzygy tablebase probing, and UCI/XBoard engine communication

anesthetic — Peer-reviewed • Rank 16.2 • Science 59%

anesthetic: nested sampling visualisation - Published in JOSS (2019)

qa-catalogue • Rank 8.2 • Science 67%

QA Catalogue – a metadata quality assessment tool for library catalogue records (MARC, PICA, UNIMARC)

kiwiPy — Peer-reviewed • Rank 16.2 • Science 59%

kiwiPy: Robust, high-volume, messaging for big-data and computational science workflows - Published in JOSS (2020)

contique • Rank 8.2 • Science 67%

Numeric continuation of equilibrium equations

ConformalPrediction • Rank 8.2 • Science 67%

Predictive Uncertainty Quantification through Conformal Prediction for Machine Learning models trained in MLJ.

cellmlmanip • Rank 13.2 • Science 62%

CellML loading and model equation manipulation

GENESIS • Rank 18.2 • Science 57%

GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness

corelay • Rank 11.2 • Science 64%

CoRelAy is a tool to compose small-scale (single-machine) analysis pipelines.

Category Encoders — Peer-reviewed • Rank 16.2 • Science 59%

Category Encoders: a scikit-learn-contrib package of transformers for encoding categorical data - Published in JOSS (2018)

cpsplines • Rank 8.2 • Science 67%

e2e-dutch • Rank 8.2 • Science 67%

Code for e2e coref model in Dutch

gtdbtk • Rank 16.2 • Science 59%

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

tensors.jl • Rank 8.2 • Science 67%

Efficient computations with symmetric and non-symmetric tensors with support for automatic differentiation.

pyrtlib • Rank 8.2 • Science 67%

PyRTlib is an attractive educational software to simulate observations from ground-based, airborne, and satellite microwave sensors. It provides a flexible and user-friendly tool to broadly simulate how electromagnetic radiation travels through the atmosphere as it interacts with atmospheric constituents.

et.nwfva • Rank 8.2 • Science 67%

R Paket der neuen Ertragstafeln der NW-FVA

qpsolvers • Rank 21.2 • Science 54%

Quadratic programming solvers in Python with a unified API

hamr • Rank 3.2 • Science 72%

Heterogeneous Accelerator Memory Resource

Weave.jl — Peer-reviewed • Rank 16.2 • Science 59%

Weave.jl: Scientific Reports Using Julia - Published in JOSS (2017)

bigsnpr • Rank 16.2 • Science 59%

R package for the analysis of massive SNP arrays.

https://github.com/bluebrain/morphology-workflows • Rank 8.1 • Science 67%

Workflows used for morphology processing.

pysam • Rank 29.1 • Science 46%

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

aswan • Rank 8.1 • Science 67%

Concurrent data collection, compression and storage

haptools • Rank 10.1 • Science 65%

Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis

PowerModels.jl • Rank 16.1 • Science 59%

A Julia/JuMP Package for Power Network Optimization

sps • Rank 8.1 • Science 67%

An R package for sequential Poisson sampling

tinygp • Rank 16.1 • Science 59%

The tiniest of Gaussian Process libraries

https://github.com/biocore/improved-octo-waddle • Rank 16.1 • Science 59%

Balanced parentheses succinct data structure in Python

celerite • Rank 16.1 • Science 59%

Scalable 1D Gaussian Processes in C++, Python, and Julia

nltools • Rank 16.1 • Science 59%

Python toolbox for analyzing imaging data

cmcrameri • Rank 18.1 • Science 57%

Making Fabio Crameri's perceptually uniform colourmaps for geosciences available on PyPI and conda-forge

snappysonic • Rank 8.1 • Science 67%

SnappySonic is an Ultrasound Simulator for use in research and public engagement.

skosprovider-heritagedata • Rank 8.1 • Science 67%

A skosprovider for the services at heritagedata.org

pyrea • Rank 8.1 • Science 67%

Multi-view clustering with flexible ensemble structures.

onnx2torch • Rank 21.1 • Science 54%

Convert ONNX models to PyTorch.

typestate • Rank 18.1 • Science 57%

Proc-macro typestate DSL for Rust

pyscancf • Rank 8.1 • Science 67%

Converts individual sweeps from IMD radars to Cf-Radial1 radar data.

avi-mmdet • Rank 29.1 • Science 46%

OpenMMLab Detection Toolbox and Benchmark

rdocdump • Rank 8.1 • Science 67%

rdocdump: Dump ‘R’ Package Source, Documentation, and Vignettes into One File

netmeta • Rank 16.0 • Science 59%

Official Git repository of R package netmeta

Bio3DView • Rank 8.0 • Science 67%

A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto

tutorials • Rank 8.0 • Science 67%

The PO.DAAC Cookbook: A place to find data recipes and tutorials for PO.DAAC datasets, tools & services