GitHub
https://github.com/faisalhakimi22/automated-customer-support-chatbot
A smart AI-powered chatbot designed to automate customer support using Rasa's conversation management with OpenAI's GPT models combines. The chatbot understands queries, provides relevant responses, and can be deployed across multiple platforms.
PSD: Parallel Finite Element Solver for Continuum Dynamics
PSD: Parallel Finite Element Solver for Continuum Dynamics - Published in JOSS (2026)
pyhctsa: A Python package for highly comparative time-series analysis
pyhctsa: A Python package for highly comparative time-series analysis - Published in JOSS (2026)
https://github.com/ferrite-fem/ferriteinterfaceelements.jl
Interface elements (aka cohesive elements) for Ferrite.jl
https://github.com/fertiglab/spatial_venous_invasion_pdac
Spatial profiling of venous invasion in human pancreatic ductal adenocarcinoma
yolo11-aps
YOLO11-APS: A Lightweight Detection Algorithm for Endangered Species in Camera Traps of Nature Reserves
https://github.com/fertiglab/cogaps
Bayesian MCMC matrix factorization algorithm
https://github.com/hbclab/restingstate
Scripts to preprocess resting state data and extract ROI-ROI correlations and voxel-wise ROI seedmaps
https://github.com/fertiglab/j1798_trial_paper
scripts for the J1798 trial paper
https://github.com/hbclab/jumpstartlearning
Various Resources if you want to learn/work on various projects in the Lab
https://github.com/fertiglab/bayestme
BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data
https://github.com/hbclab/projectacuteexercise-cognitivecontrol
Data and related summaries and analyses from acute exercise project comparing effects on two cognitive control tasks.
https://github.com/hbclab/repositorylearning
Example repository towards learning/working with git
https://github.com/hwunrow/bayesian-cyclegan
[TNNLS] Bayesian Cycle-Consistent Generative Adversarial Networks via Marginalizing Latent Sampling
https://github.com/fertiglab/mkras-vax
scRNA and TCR analysis, including T-cell expansion assays, from subjects in J1994 manuscript by Huff et al.
https://github.com/hbclab/softwareissues
Issues when running primarily fmriprep/mriqc/xcpengine (primarily on argon)
https://github.com/fertiglab/pdac_atlas
Analysis workflow for all data present in our PDAC Atlas Manuscript titled, "Transfer learning associates CAFs with EMT and inflammation in tumor cells in human tumors and organoid co-culture in pancreatic ductal adenocarcinoma"
https://github.com/hbclab/renameoldfmriprep
rename the old fmriprep (< v1.2.0) files
https://github.com/jcallinan/the-algorithm-ml
Source code for Twitter's Recommendation Algorithm
https://github.com/faisalhakimi22/provenance
Media Literacy Platform Helping people see truth, spot fakes, and build trust online
https://github.com/hbclab/pysurfer
Cortical neuroimaging visualization in Python
https://github.com/hbclab/atlascorr
basic correlations of fMRI data using an atlas
https://github.com/hbclab/miykael.github.io
Repo for my personal page: https://miykael.github.io/
https://github.com/hbclab/eprimedockerfile
Dockerfile to create the environment to run the eprime conversion code in the task repositories
https://github.com/924973292/awesome-aerial-ground-object-re-identification
Awesome-AGReID is a curated collection of the latest methods, datasets, and benchmarks for Aerial–Ground Object Re-Identification (AG-ReID). This field focuses on matching objects, mainly people and vehicles, between aerial drone views and ground cameras—an important task for surveillance and security applications.
https://github.com/hbclab/networkneuroscience
Repository for scripts to run network analyses on neuroimaging data
https://github.com/hbeale/epinano
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
https://github.com/jcbayley/vitamin_c
This will be the first official public release of the VItamin code base. VItamin is a python package for producing fast gravitational wave posterior samples.
https://github.com/jchiyah/exploring-mm-in-simmc2
Code and models for the paper 'Exploring Multi-Modal Representations for Ambiguity Detection & Coreference Resolution in the SIMMC 2.0 Challenge' published at AAAI 2022 DSTC10 Workshop
https://github.com/hbpmedical/mip-deployment
Deploy the Medical Informatics Platform
https://github.com/hbpmedical/mip_schema
Open-source Python package to manipulate Common Data Elements Metadata Schema for the Medical Informatics Platform (MIP).
https://github.com/jcj7292/mda-cnn
Paper https://www.sciencedirect.com/science/article/pii/S0045782521007015
https://github.com/jclutch/system-design-primer
Learn how to design large-scale systems. Prep for the system design interview. Includes Anki flashcards.
https://github.com/jcmcnch/global-rrna-univeral-metabarcoding-of-plankton
A central repository for the GRUMP (Global rRNA Universal Metabarcoding of Plankton) dataset, containing scripts for bioinformatic processing and retrieval of associated physical / geochemical measurements from publicly available data.
https://github.com/hbpmedical/heatmaply
Interactive Heat Maps for R Using plotly
metagenomics-organization-workbench
Preview of carpentries-lab/metagenomics-organization transitioned to use the Workbench
https://github.com/jcmgray/abeliantensors
A library for Abelian symmetry preserving tensors in Python 3
https://github.com/faisalhakimi22/alephlam
A beautiful, modern website for AlephLam, an online Islamic education platform offering Quran and Arabic learning courses for the whole family.
https://github.com/jcmgray/opt_einsum_samples
Tensor network sample contractions in JSON format for testing opt_einsum.
https://github.com/hbrown18/e3sm
Energy Exascale Earth System Model source code.
https://github.com/hcdenbakker/seqsero
Salmonella serotyping from genome sequencing data
https://github.com/hcdenbakker/clonalframeml
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes