https://github.com/biocommons/anyvar
[in development] Proof-of-Concept variation translation, validation, and registration service
https://github.com/biocommons/mirrors-ncbi
Makefile (of all things) to space-efficiently mirror selected NCBI resources
https://github.com/biocomputingup/cagi-p16-assessment
https://genomeinterpretation.org/content/predict-how-variants-p16-tumor-suppressor-protein-affect-cell-proliferation
https://github.com/biocomputingup/geometre_results
GeomeTRe calculation results for STRPs from RepeatsDB v4, including large-scale and statistical analyses. Reproducible Jupyter Notebook scripts are available in this repository.
https://github.com/biocomputingup/caid-reference
Critical Assessment of Protein Intrinsic Disorder (CAID) - Reference generation and analysis
https://github.com/biocomputingup/drmaatic
DRMAAtic REST APIs for job scheduling @BioCompUP
https://github.com/biocomputingup/cagi-id-assessment
Assessment scripts for ID challenge of CAGI 5
https://github.com/biocomputingup/proseqviewer-documentation
Reference documentation of ProSeqViewer
https://github.com/biocomputingup/biological_data
Biological Data - Data Science - University of Padova
https://github.com/bioconductor/bsgenome
Software infrastructure for efficient representation of full genomes and their SNPs
https://github.com/bioconductor/rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
https://github.com/bioconductor/ucsc.utils
Low-level utilities to retrieve data from the UCSC Genome Browser
https://github.com/bioconductor/csama-labs
laboratory materials for the Bressanone course