Projects

Updated 10 months ago

hgtseq • Rank 5.1 • Science 67%

A pipeline to investigate horizontal gene transfer from NGS data

bwa-mem bwa-mem2 fastqc genomics-visualization ggbio horizontal-gene-transfer kraken2 krona multiqc nextflow nf-core ngs pipeline samtools taxonomies tidyverse workflow

Updated 9 months ago

https://github.com/kalilamali/fishdna_pipeline • Science 10%

Step-by-step approach in the analysis of Rainbow trout DNA from raw reads to population insights using fastqc, trimmomatic, bwa, vcftools, plink, and R.

bash bwa fastqc fisheries genomics ncbi norway plink r trimmomatic usa vcftools

Updated 10 months ago

fair_fastqc_multiqc • Science 44%

Perform basic QC over sequenced data

fair fastqc fastqscreen reproducible-workflows snakemake

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

hgtseq • Rank 5.1 • Science 67%

https://github.com/kalilamali/fishdna_pipeline • Science 10%

fair_fastqc_multiqc • Science 44%