jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
zol
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
pycirclize
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
cogclassifier
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
syntenet
An R package to infer and analyze synteny networks from protein sequences
orthogene
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃♀️
cogeqc
An R package to perform systematic quality checks on comparative genomics analyses
aniclustermap
A tool for drawing ANI clustermap between all-vs-all microbial genomes
camsa
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
doubletrouble
An R package to identify and classify duplicated genes from whole-genome protein sequence data
pairgenomealign
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results