viralrecon • Rank 8.4 • Science 77%

Assembly and intrahost/low-frequency variant calling for viral samples

readfish • Rank 12.4 • Science 59%

CLI tool for flexible and fast adaptive sampling on ONT sequencers

read5_ont • Science 54%

Wrapper to read fast5 and pod5 files.

isocomp • Science 31%

Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseq

dynamont • Science 54%

read5 • Science 54%

Wrapper to read fast5, slow5, blow5 and pod5 files.

bacqc-ont • Science 67%

bacQC-ONT is a bioinformatics pipeline for the assessment of Oxford Nanopore sequence data

assemblebac-ont • Science 67%

avantonder/assembleBAC-ONT is a bioinformatics pipeline that de novo assembles and annotates Oxford Nanopore (ONT) long-read sequence data.

evexplorer • Science 57%

nf-core/evexplorer is a pipeline for analyzing RNA data from extracellular vesicles, compatible with technologies such as nextflex, comboSeq, and ONT with further support forthcoming. evexplorer handles QC, expressed region detection, library size normalization and Differential RNA Expression (DRE)