Learning from Crowds with Crowd-Kit
Learning from Crowds with Crowd-Kit - Published in JOSS (2024)
CheckQC
CheckQC: Quick quality control of Illumina sequencing runs - Published in JOSS (2018)
mrivis
mrivis: Medical image visualization library for neuroscience in python - Published in JOSS (2018)
MRdataset
MRdataset : A unified and user-friendly interface to medical imaging datasets - Published in JOSS (2024)
multiqc
Aggregate results from bioinformatics analyses across many samples into a single report.
mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
PTXQC
A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
MHKiT-Python
MHKiT-Python provides the marine renewable energy (MRE) community tools for data processing, visualization, quality control, resource assessment, and device performance.
metpyqc
Python library for quality control and reconstruction of meteorological data
nireports
The NiPreps' Reporting and Visualization system - report templates and "reportlets"
npyc
The nPYc-Toolbox defines objects for representing, and implements functions to manipulate and display, metabolic profiling datasets.
digitalcellsorter
Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:
visualqc
VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
https://github.com/cqfn/aibolit
A Static Analyzer for Java Powered by Machine Learning: Identifies Anti-Patterns Begging for Refactoring
https://github.com/argocanada/bgcargodmqc
python package for performing DMQC on BGC-Argo data
https://github.com/cdcgov/mira
MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation
https://github.com/biosimulations/biomodels-qc
Quality control tool for the BioModels repository of biochemical models
the-real-genotools
GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for computational biology and genetics research.
scdownstream
A single cell transcriptomics pipeline for QC, integration and making the data presentable
agweather-qaqc
agweather-qaqc: An Interactive Python Package for Quality Assurance and Quality Control of Daily Agricultural Weather Data and Calculation of Reference Evapotranspiration - Published in JOSS (2024)
genomeqc
Compare the quality of multiple genomes, along with their annotations.
ddmra
Code for running distance-dependent motion-related artifact analyses in Python
https://github.com/alleninstitute/quality_control_ecosystem
This repository hosts a web page providing information on multiple repos that make up the quality control ecosystem. Please visit
https://github.com/fgcz/prolfqua
Differential Expression Analysis tool box R lang package for omics data
irfcb
I 'R' FlowCytobot (iRfcb): Tools for Analyzing and Processing Data from the IFCB
atlas
Single-file quality control prototyping pipeline for diverse mass spectrometry workflows.
https://github.com/a-herzog/qc
Statistical quality control is a web service for calculating sampling plans for statistical quality control.
tumourevo
Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)
https://github.com/awslabs/sagemaker-defect-detection
Detect Defects in Products from their Images using Amazon SageMaker
crocodeel
CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
saqc
This is a read-only mirror, comments, issues and pull requests are very welcome on https://git.ufz.de/rdm-software/saqc.
https://github.com/aswendt-lab/aidaqc
An automated and simple tool for fast quality analysis of animal MRI
bacqc-ont
bacQC-ONT is a bioinformatics pipeline for the assessment of Oxford Nanopore sequence data