Connectome Mapper 3
Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human Connectome Mapping - Published in JOSS (2022)
Asimov
Asimov: A framework for coordinating parameter estimation workflows - Published in JOSS (2023)
https://github.com/agnostiqhq/covalent
Pythonic tool for orchestrating machine-learning/high performance/quantum-computing workflows in heterogeneous compute environments.
polyaxon
MLOps Tools For Managing & Orchestrating The Machine Learning LifeCycle
configs
Config files used to define parameters specific to compute environments at different Institutions
test-datasets
Test data to be used for automated testing with the nf-core pipelines
https://github.com/zenml-io/zenml
ZenML 🙏: MLOps for Reliable AI: from Classical AI to Agents. https://zenml.io.
MLJ
MLJ: A Julia package for composable machine learning - Published in JOSS (2020)
https://github.com/agnostiqhq/covalent-ssh-plugin
Executor plugin interfacing Covalent with remote backends using SSH
https://github.com/agnostiqhq/covalent-awsbatch-plugin
Executor plugin interfacing Covalent with AWS Batch
https://github.com/agnostiqhq/covalent-awslambda-plugin
Executor plugin interfacing Covalent with AWS Lambda
https://github.com/agnostiqhq/covalent-ecs-plugin
Executor plugin interfacing Covalent with Amazon ECS Fargate
https://github.com/agnostiqhq/covalent-braket-plugin
Executor plugin interfacing Covalent with Amazon Braket Hybrid Jobs
https://github.com/agnostiqhq/covalent-gcpbatch-plugin
Executor plugin interfacing Covalent with GCP Batch
https://github.com/agnostiqhq/covalent-kubernetes-plugin
Executor plugin interfacing Covalent with Kubernetes
https://github.com/broadinstitute/long-read-pipelines
Long read production pipelines
https://github.com/agnostiqhq/covalent-slurm-plugin
Executor plugin interfacing Covalent with Slurm
https://github.com/sintel-dev/ml-stars
Primitives and Pipelines for Time Series Data
https://github.com/vents-io/vents
Open source connections catalog, integrations, tools, alerting, and notifications library.
https://github.com/andr1976/ramdecom
Pipeline decompression wavespeed calculation
https://github.com/project-codeflare/codeflare
Simplifying the definition and execution, scaling and deployment of pipelines on the cloud.
vent
Vent is a light-weight platform built to automate network collection and analysis pipelines using a flexible set of popular open source tools and technologies. Vent is python-based, extensible, leverages docker containers, and provides both an API and CLI.
hamrlnc
High-throughput pipeline for modified mRNA annotation and long non-coding RNA annotation
evexplorer
nf-core/evexplorer is a pipeline for analyzing RNA data from extracellular vesicles, compatible with technologies such as nextflex, comboSeq, and ONT with further support forthcoming. evexplorer handles QC, expressed region detection, library size normalization and Differential RNA Expression (DRE)
https://github.com/danielvartan/argus
📘 Home Assignment for the Data Scientist Position (Curves) at Argus Media Group
eyeris
🧠 Advanced reproducible pupillometry preprocessing in R | Interactive reports, BIDS-compliant, High-throughput database tooling out-of-the-box | Actively developed by cognitive neuroscientists at Stanford University
https://github.com/alpha-unito/pico
A C++ framework for data analytics pipelines
