Updated 9 months ago
viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
Updated 9 months ago
https://github.com/akikuno/dajin2
🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing
Updated 9 months ago
https://github.com/clinical-genomics/stranger
Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
Updated 9 months ago
https://github.com/akikuno/midsv
a Python module to translate SAM into MIDSV format.
Updated 9 months ago
isocomp
Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseq
Updated 9 months ago
scnanoseq
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Updated 9 months ago
annexseq
Nextflow pipeline to combine nanoseq and ANNEXA for long-read RNASeq data
Scientific Software
Updated 9 months ago
seabreeze
seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies - Published in JOSS (2025)
Scientific Software · Peer-reviewed