Updated 9 months ago

https://github.com/akikuno/dajin2 • Rank 8.7 • Science 49%

🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing

Updated 9 months ago

https://github.com/clinical-genomics/stranger • Rank 10.8 • Science 36%

Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat

Updated 9 months ago

https://github.com/akikuno/midsv • Science 36%

a Python module to translate SAM into MIDSV format.

Updated 9 months ago

isocomp • Science 31%

Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseq

Updated 9 months ago

lorax • Science 39%

A long-read analysis toolbox for cancer and population genomics

Updated 9 months ago

scnanoseq • Science 57%

Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics

Updated 9 months ago

annexseq • Science 31%

Nextflow pipeline to combine nanoseq and ANNEXA for long-read RNASeq data

Scientific Software
Updated 9 months ago

seabreeze — Peer-reviewed • Science 87%

seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies - Published in JOSS (2025)