nanoseq • Rank 8.8 • Science 67%

Nanopore demultiplexing, QC and alignment pipeline

sequali • Rank 11.5 • Science 57%

Fast sequencing data quality metrics

nireports • Rank 16.4 • Science 36%

The NiPreps' Reporting and Visualization system - report templates and "reportlets"

MsQuality • Rank 12.1 • Science 26%

visualqc • Rank 10.5 • Science 26%

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

DEGreport • Rank 18.0 • Science 13%

Create a cromphensive report of DEG list coming from any analysis of RNAseq data

nf-aggregate • Science 57%

Pipeline to aggregate pertinent metrics across pipeline runs on the Seqera Platform (beta)

https://github.com/ay-lab/chipline • Science 13%

ChIP-seq analysis pipeline

bacqc • Science 49%

bacQC is a bioinformatics analysis pipeline for assessing the quality of bacterial isolate sequence data

spatialvpt • Science 65%

Segmentation and QC workflow for MERSCOPE using vizgen-postprocessing tool

https://github.com/ay-lab/atacproc • Science 13%

ATAC-seq processing pipeline

exploreasl • Science 49%

ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.mutsaerts@amsterdamumc.nl. Development details can be found under the wiki tab. Code documentation can be found on the documentation website https://exploreasl.github.io/Documentation

bacqc-ont • Science 67%

bacQC-ONT is a bioinformatics pipeline for the assessment of Oxford Nanopore sequence data