Updated 9 months ago
icellr
Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).
Updated 9 months ago
singleCellHaystack
Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
Updated 9 months ago
https://github.com/noble-lab/sceptic
Pseudotime analysis for time-series single-cell sequencing and imaging data