findpapers
Findpapers: A tool for helping researchers who are looking for related works
paperscraper
Tools to scrape publications & their metadata from pubmed, arxiv, medrxiv, biorxiv and chemrxiv.
https://github.com/learningcircuit/local-deep-research
Local Deep Research achieves ~95% on SimpleQA benchmark (tested with GPT-4.1-mini). Supports local and cloud LLMs (Ollama, Google, Anthropic, ...). Searches 10+ sources - arXiv, PubMed, web, and your private documents. Everything Local.
https://github.com/citation-js/plugin-quickstatements
Citation.js plugin to output QuickStatements
https://github.com/bmascat/ebara
Evidence-Based AI Research Assistant (EBARA) is a tool designed to assist researchers and healthcare professionals in retrieving and analyzing scientific articles from PubMed
https://github.com/citation-js/plugin-pubmed
Citation.js plugin for PubMed and PubMed Central identifiers
pubmed
Get literature information via PubMed ID, such as the author, title, journal_name, pub_date and so on.
pairwise-pubmed-search-generator
A web application for building PubMed search strings from pairwise combinations of two lists.
predictivebreakthroughs
Code for Prediction of Transformative Breakthroughs in Biomedical Research manuscript
https://github.com/cthoyt/pubmed-downloader
Automate downloading and processing PubMed in bulk
pharmacovigilance-literature-mining
Co-occurrence analysis in pubmed and faers of two lists of terms.
https://github.com/Dianel555/paper-search-mcp-nodejs
A Node.js implementation of the Model Context Protocol (MCP) server for searching and downloading academic papers from multiple sources, including **Web of Science**, arXiv, and more.