PII-Codex
PII-Codex: a Python library for PII detection, categorization, and severity assessment - Published in JOSS (2023)
pref_voting
pref_voting: The Preferential Voting Tools package for Python - Published in JOSS (2025)
Caliban
Caliban: Docker-based job manager for reproducible workflows - Published in JOSS (2020)
chronovise
chronovise: Measurement-Based Probabilistic Timing Analysis framework - Published in JOSS (2018)
TreeSearch
R package for phylogenetic tree search under inapplicable-corrected parsimony and custom optimality criteria
Quartet
R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)
https://github.com/learningcircuit/local-deep-research
Local Deep Research achieves ~95% on SimpleQA benchmark (tested with GPT-4.1-mini). Supports local and cloud LLMs (Ollama, Google, Anthropic, ...). Searches 10+ sources - arXiv, PubMed, web, and your private documents. Everything Local.
phenodata
An acquisition and processing toolkit for open access phenology data.
orca
ORCA: Oceanic Recognition & Classification Application for sea-life analysis systems.
fa
Automation tool for locating symbols & structs in binary (primary IDA focused)
xp
A framework (comand line tool + libraries) for creating flexible compute pipelines
vcf-reformatter
🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format with intelligent transcript handling.
https://github.com/crocs-muni/eacirc
Automatic problem solver based on circuit-like representation and genetic programming
tekst
A collaborative research platform for resources on natural language texts
https://github.com/chiragagg5k/scholar-map
AI-Powered Research Assistant using MindsDB Knowledge Bases
conezen
A Python toolkit for computational chemists to analyze and visualize conical intersection topology. It transforms raw quantum chemistry output into intuitive 3D potential energy surfaces to help predict the outcomes of photochemical reactions. Licensed under GPL-3.0.
lart-research-assistant
The L’ART Research Assistant is a freely available open-source app that aims to make life easier for researchers working on bilingualism, sociolinguistics, language attitudes, and regional/minority/minoritized languages.
nelphase
Network Environment Learning (NEL) Phase for Covert Channels (with a Feedback Channel)
ibc-benchmarking
This repository contains the performance evaluation tool and the dataset from the DSN '23 research paper "Analyzing the Performance of the Inter-Blockchain Communication Protocol".
HelpMe Command Line Helper Utility
HelpMe Command Line Helper Utility - Published in JOSS (2018)
cactool
An easy way to collaboratively code social media posts for manual content and discourse analysis
traversecraft
TraverseCraft is a versatile Python library for creating static, animated, and interactive visualizations, enabling robust simulations for AI, RL, and ML. Ideal for students, educators, and researchers, it allows real-time observation of algorithm behaviors with an intuitive interface.
jabref
Graphical Java application for managing BibTeX and BibLaTeX (.bib) databases
https://github.com/centre-for-humanities-computing/semantic-kernel
Tool for building and visuaulizing neural concept graphs
taguette
Free and open source qualitative research tool -- MIRROR OF GITLAB REPOSITORY
cceap
The Covert Channel Educational Analysis Protocol (CCEAP) is a network protocol designed for teaching covert channels to professionals and students in higher education. It is also an easy-to-use covert channel traffic generator. The basis for CCEAP are so-called `hiding patterns'.