https://github.com/compomics/xtandem-parser
Java-based parser for X!Tandem output xml files
https://github.com/compomics/spectrum_similarity
Scoring functions to compare MS/MS spectra
dziga.jl
Code for the final project of MIT's 6.S083: a Google Street view router
manzanitas-mexican-candy
An online Mexican candy store. Full-stack portfolio project that utilizes React, Node.js and PostgreSQL
ndarray-vector-uint32
Create an unsigned 32-bit integer vector (i.e., a one-dimensional ndarray).
https://github.com/compomics/moff
A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
https://github.com/compomics/fragmentation-analyzer
A standalone java tool for analyzing ms/ms fragmentation data.
superpoint_transformer
Official PyTorch implementation of Superpoint Transformer introduced in [ICCV'23] "Efficient 3D Semantic Segmentation with Superpoint Transformer" and SuperCluster introduced in [3DV'24 Oral] "Scalable 3D Panoptic Segmentation As Superpoint Graph Clustering"
https://github.com/comprhys/elemd
A minimal implementation of the Element-Movers-Distance using modular libraries.
counterexamles-to-a-conjecture-of-faudree-and-schelp
A repository to maintian the code used to find new counterexamples to a conjecture by Faudree and Schelp
multi-ego
Set of tools to generate a multi-eGO force field to perform molecular dynamics simulations
frontiers-quarto-extension
Enhanced Quarto extension for Frontiers journal manuscripts with Harvard citation style, featuring clickable DOI links and CSL-compatible bibliography formatting
2023-09-18-biocintro-eurobioc
Introduction to data analysis with R and Bioconductor, Ghent, Belgium
EnergyModelsGeography
Package for extending EnergyModelsX with geographical features.
@hugoalh/djb2a
An ECMAScript (JavaScript & TypeScript) module to get the non-cryptographic hash of the data with algorithm DJB2a.
https://github.com/computational-mama/cmama-v2
Main website of Computational Mama - built with 11ty
data-morph-ai
Morph an input dataset of 2D points into select shapes, while preserving the summary statistics to a given number of decimal points through simulated annealing. It is intended to be used as a teaching tool to illustrate the importance of data visualization.
https://github.com/computational-mama/flora-repo
Exploring Adafruit Flora with Studio Dabu
transnewguineaorg
CLDF dataset derived from Greenhill's "TransNewGuinea.org" from 2015
zetahunter
Reproducible taxonomic classification for Zetaproteobacteria and other poorly resolved taxa.
tutorials-early
Tutorials to learn reading, cleaning and validating case data, and converting line list data to incidence for visualizing epidemic curves.
https://github.com/computational-psychology/domijan2015
Python implementation of lightness model based on filling-in, as described in Domijan (2015)
https://github.com/computationalbiomechanicslab/www.opensimcreator.com
The source code behind www.opensimcreator.com
fastcluster.jl
Julia wrapper for the fastcluster library for hierarchical clustering
llm-usage-reporting-analysis
A comprehensive framework for analyzing LLM usage reporting in medical research papers
gdal
GDAL is an open source X/MIT licensed translator library for raster and vector geospatial data formats.
holistic-transparency-memory-engine
this is the first step to an all local middleware for local ai agentic style hosting.
jpwahle.com-citations
Citation helper to display stats from Google Scholar on webpage.
general-plan-map-python
A python implimentation of the General Plan Searching website
https://github.com/computationalphysiology/ciucci-2024
Source code for reproducing results of ciucci-2024 paper
https://github.com/computationalphysiology/journal_club
List of relevant papers for journal cub in Computational Physiology department at Simula
https://github.com/computationalphysiology/uio-digital-scholarship-days
Material for workshop on Digital Scholarship Days at UiO
https://github.com/computationalphysiology/mesh-generation-guide
A visual guide to mesh generation from medical images using open-source tools available for any operating system.
fermo_core
Data processing/analysis functionality of metabolomics dashboard FERMO
https://github.com/computationalphysiology/mps_automation
Scripts for automating the mps analysis
https://github.com/computationalphysiology/sscp_2023_project6
Model codes and demos for Simula summer school 2023 project 6
