stars-reproduce-allen-2020
Test-run of our reproducibility protocol on Allen et al. 2020: "A simulation modelling toolkit for organising outpatient dialysis services during the COVID-19 pandemic"
quarto-badge
Badge is an extension for Quarto to provide a shortcode to display software version or anything as a badge.
https://github.com/corymccartan/cmc-article
Lightweight and customizable Quarto article format
https://github.com/danilofreire/quarto-templates
A collection of personal templates for Quarto
eccb2024
Repository for a training course on systematic conservation planning at the ECCB 2024
https://github.com/ambarja/ambarja.github.io
This is my personal website 🤓 when you can search for everything related to geoespatial technology using free software and open source.🌎🐧
https://github.com/atomashevic/quarto-dracula
Dracula theme for Quarto HTML documents
stars-reproduce-lim-2020
Assessing the computational reproducibility of Lim et al. 2020 as part of STARS.
stars-reproduce-kim-2021
Assessing the computational reproducibility of Kim et al. 2021 as part of STARS.
packageskeleton
A GitHub repository featuring a starter template for R package development, paired with a Quarto-powered website.
https://github.com/a-asen/pres-helseuka-habits-2025
A Quarto presentation about habits in Norwegian.
diskriminierungsfreie-metadaten
Handbuch zur Erstellung diskriminierungsfreier Metadaten für historische Quellen und Forschungsdaten: Erfahrungen aus dem historischen Forschungsprojekt Stadt.Geschichte.Basel.
https://github.com/damianooldoni/qmd_dashboard
Solution of the Bonus challenge 2, INBO coding club edition of Feb 24, 2025.
reproducible-analysis-training
SIB course on FAIR analysis with Quarto, GitHub and Zenodo
quarto-language-cell-decorator
Quarto extension to add a decorator to the code cells to display the language name.
https://github.com/danielvartan/argus
📘 Home Assignment for the Data Scientist Position (Curves) at Argus Media Group
https://github.com/damianooldoni/gam_concept_paper
Workflow to create GAM plots to include in the B-Cubed paper: "Creating the vision of rapid, repeatable, reactive data workflows for policy on biodiversity"
stars-reproduce-hernandez-2015
Assessing the computational reproducibility of Hernandez et al. 2015 as part of STARS.
quarto-modal
A Quarto extension providing a simple way to create Bootstrap modals in your HTML documents.
guide-to-n3c-v1
Research with the National COVID Cohort Collaborative (N3C: https://ncats.nih.gov/n3c)
quarto_presentation_template
Template repository to provide a starting point for my presentations
nf-vuegen
nf-core module designed to automate report generation from outputs produced by other modules, subworkflows, or pipelines. VueGen creates reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications.
vuegen
VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications. Users simply provide a directory with output files and VueGen compiles them into a structured report.
quarto-preview-colour
A Quarto extension to add preview colour as a coloured symbol next to colour code.
https://github.com/bioconductor/biocblog
A Quarto blog for Bioconductor community
website-achalma
Aquí podrás encontrar todos los archivos y códigos utilizados para construir mi sitio web personal. Desde el diseño y la estructura hasta el contenido y la funcionalidad, todo está a tu disposición para que puedas explorar, aprender y crear tu propio sitio web. ¡Disfruta!
stars-reproduce-huang-2019
Assessing the computational reproducibility of Huang et al. 2019 as part of STARS.
stars-reproduce-shoaib-2022
Assessing the computational reproducibility of Shoaib and Ramamohan 2022 as part of STARS.
fieldstack
Reusable R notebooks, scripts, and tools for applied data work and evaluation — built for use in the field across health, gender, climate, and education programs.
reproducible-publications-quarto
Introduction to Reproducible Publications with Quarto
11521-adv-geo-comp
Syllabus and materials for redesigned 11.521, Advanced Geographic Computation for Urban Planning
quarto-lua-env
lua-env is an extension for Quarto to provide access to LUA objects as metadata.
frontiers-quarto-extension
Enhanced Quarto extension for Frontiers journal manuscripts with Harvard citation style, featuring clickable DOI links and CSL-compatible bibliography formatting
quarto-external
Quarto extension to include content or partial content from external file.
quarto-spotlight
A Quarto extension for Reveal.js allowing to highlight the current mouse position with a spotlight.
quarto-div-reuse
The power of "code/content reuse" for seamless and efficient content creation.
biocomp-book
A repo hosting the combined lectures of a course on Fundamentals of Computational Biology
quarto-highlight-text
Quarto extension that allows to highlight text in a document for various formats: HTML, LaTeX, Typst, Reveal.js, Beamer, PowerPoint, and Docx.
oa_dashboards_quarto
Introduction to creating Open-Access-Monitoring Dashboards with Quarto
stars-reproduce-anagnostou-2022
Assessing the computational reproducibility of Anagnostou et al. 2022 as part of STARS.
quarto-codespaces
Quarto Codespaces / Dev Containers setup for quick online testing.
lintquarto
Package for running linters, static type checkers and code analysis tools on python code in quarto (.qmd) files.
quarto-github
Use GitHub short references (commits, issues, discussions, and pull requests) directly into your Quarto documents.
apaquarto
A quarto extension for creating APA7 documents in .docx, .html, and .pdf formats
quarto-project-example
Project Example for the Lesson: Introduction to Reproducible Publications with Quarto
stars-reproduce-johnson-2021
Assessing the computational reproducibility of Johnson et al. 2021 as part of STARS.
quarto-iconify
Use Iconify icons in HTML-based Quarto documents (over 200,000 open source vector icons).