seaborn
seaborn: statistical data visualization - Published in JOSS (2021)
Missingno
Missingno: a missing data visualization suite - Published in JOSS (2018)
CMasher
CMasher: Scientific colormaps for making accessible, informative and 'cmashing' plots - Published in JOSS (2020)
corner.py
corner.py: Scatterplot matrices in Python - Published in JOSS (2016)
OpenSpace
OpenSpace: An open-source astrovisualization framework - Published in JOSS (2017)
PVGeo
PVGeo: an open-source Python package for geoscientific visualization in VTK and ParaView - Published in JOSS (2019)
see
see: An R Package for Visualizing Statistical Models - Published in JOSS (2021)
TransBigData
TransBigData: A Python package for transportation spatio-temporal big data processing, analysis and visualization - Published in JOSS (2022)
ivis
ivis: dimensionality reduction in very large datasets using Siamese Networks - Published in JOSS (2019)
pygtc
pygtc: beautiful parameter covariance plots (aka. Giant Triangle Confusograms) - Published in JOSS (2016)
Kepler Mapper
Kepler Mapper: A flexible Python implementation of the Mapper algorithm. - Published in JOSS (2019)
autoplotly
autoplotly: An R package for automatic generation of interactive visualizations for statistical results - Published in JOSS (2018)
PIVA: Photoemission Interface for Visualization and Analysis
PIVA: Photoemission Interface for Visualization and Analysis - Published in JOSS (2025)
PatchView
PatchView: A Python Package for Patch-clamp Data Analysis and Visualization - Published in JOSS (2022)
archeoViz
archeoViz: an R package for the Visualisation, Exploration, and Web Communication of Archaeological Spatial Data - Published in JOSS (2023)
HiPart
HiPart: Hierarchical Divisive Clustering Toolbox - Published in JOSS (2023)
The plebeian Graph Library
The plebeian Graph Library: A WebGL based network visualisation and diagnostics package - Published in JOSS (2024)
Lexicon-Mono-Seq, DOM Text Based Async MSA Viewer
Lexicon-Mono-Seq, DOM Text Based Async MSA Viewer - Published in JOSS (2019)
multiqc
Aggregate results from bioinformatics analyses across many samples into a single report.
Syd
Syd: A package for making interactive data visualizations in python - Published in JOSS (2025)
ctbench - compile-time benchmarking and analysis
ctbench - compile-time benchmarking and analysis - Published in JOSS (2023)
ConTEXT Explorer
ConTEXT Explorer: a web-based text analysis tool for exploring and visualizing concepts across time - Published in JOSS (2021)
plotastic
plotastic: Bridging Plotting and Statistics in Python - Published in JOSS (2024)
gdess
gdess: A framework for evaluating simulated atmospheric CO₂ in Earth System Models - Published in JOSS (2022)
EFAshiny
EFAshiny: An User-Friendly Shiny Application for Exploratory Factor Analysis - Published in JOSS (2018)
AstronomicAL
AstronomicAL: an interactive dashboard for visualisation, integration and classification of data with Active Learning - Published in JOSS (2021)
pygeohydro
A part of HyRiver software stack for accessing hydrology data through web services
vitessce
Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
khroma
Colour Schemes for Scientific Data Visualization - :exclamation: This is a read-only mirror from https://codeberg.org/tesselle/khroma
pyart
The Python-ARM Radar Toolkit. A data model driven interactive toolkit for working with weather radar data.
forestplot
A Python package to make publication-ready but customizable coefficient plots.
gradio
Build and share delightful machine learning apps, all in Python. 🌟 Star to support our work!
efp-seq_browser
An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.
spectrafit
📊📈🔬 SpectraFit is a command-line and Jupyter-notebook tool for quick data-fitting based on the regular expression of distribution functions.
pandas-ai
Chat with your database or your datalake (SQL, CSV, parquet). PandasAI makes data analysis conversational using LLMs and RAG.
xyz2graph
Convert an xyz file into a molecular graph and create a 3D visualisation of the graph.
outset
add zoom indicators, insets, and magnified panels to matplotlib/seaborn visualizations with ease!
GeneTonic
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
pretzel
Javascript full-stack framework for Big Data visualisation and analysis
genome-spy
A visualization grammar and GPU-accelerated toolkit for genomic data
ml-hierarchical-confusion-matrix
Neo: Hierarchical Confusion Matrix Visualization (CHI 2022)
cloupy
CLOUPY IS NO LONGER SUPPORTED. PLEASE, SEE README. cloupy is a Python library for climatological data downloading, processing and visualizing. The main goal of the library is to help its author in writing a BA thesis. The library is well adapted to academic work - used data sources are reliable and graphs are easy to modify.
r-raster-vector-geospatial
Introduction to Geospatial Raster and Vector Data with R
tabula
tabula: An R Package for Analysis, Seriation, and Visualization of Archaeological Count Data - Published in JOSS (2019)
interactive_data_editor
A Software to interactively edit data in a graphical manner
teeplot
organize data visualization output, automatically picking meaningful names based on semantic plotting variables
karyoploteR
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
https://github.com/chaoss/grimoirelab
GrimoireLab: platform for software development analytics and insights
comparative_ml_analysis_bioinformatics
A comprehensive analysis of gene expression data using machine learning techniques in Python and R, focusing on predictive modeling and data visualization
augur
Python library and web service for Open Source Software Health and Sustainability metrics & data collection. You can find our documentation and new contributor information easily here: https://oss-augur.readthedocs.io/en/main/
https://github.com/modelscope/data-juicer
Data processing for and with foundation models! 🍎 🍋 🌽 ➡️ ➡️🍸 🍹 🍷
https://github.com/cytoscape/cytoscape-web
A browser-based implementation of Cytoscape for network visualization and analysis. Runs entirely in your browser with data-driven styling, collaborative workflows, and Cytoscape ecosystem integration.
hypertools
A Python toolbox for gaining geometric insights into high-dimensional data
marimo
Transform data, train models, and run SQL with marimo — feels like a next-gen reactive notebook, stored as Git-friendly reproducible Python. Deploy as scripts, pipelines, endpoints, and apps. All from an AI-native editor (or your own).
divbrowse
A web application for interactive visualization and exploratory data analysis of variant call matrices
https://github.com/cafferychen777/ggpicrust2
Make Picrust2 Output Analysis and Visualization Easier
scpubr
Generate high quality, publication ready visualizations for single cell transcriptomics data.
survey-live-temperature-map
These scripts create daily survey station daily temperature and anomaly plots as the ships work their way through the Bering Sea. These ships are conducting NOAA Fisheries' Alaska Fisheries Science Center's fisheries independent surveys in the Eastern Bering Sea. Scripts pull temperatures from google drive, entered by FPCs at sea, create daily maps and composite gifs, and then push the maps to google drive for the communications team.
https://github.com/alleninstitute/openscope_databook
OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈
r-hrbrthemes
:lock_with_ink_pen: Opinionated, typographic-centric ggplot2 themes and theme components
pycirclize
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
dl4pude
The framework automatically detects pushing behavior from videos of crowded event entrances.
https://github.com/predict-idlab/plotly-resampler
Visualize large time series data with plotly.py
bluecloud-plankton
Spatial interpolation of plankton data using a neural network
electricitymaps-contrib
The open source repository for Electricity Maps App and data parsers that enables a real-time visualisation of the CO2 emissions of electricity consumption
unsupervised_analysis
A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) and visualizations of high-dimensional data.
