GitHub
@stdlib/blas-ext-base-gcusumkbn2
Calculate the cumulative sum of strided array elements using a second-order iterative Kahan–Babuška algorithm.
lls-core
Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.
pyfabm
The Framework for Aquatic Biogeochemical Models (FABM): a Fortran 2003 programming framework for biogeochemical models of marine and freshwater systems.
qecp
An educational tool to the introduction of Quantum Error Correction (QEC)
westpa
WESTPA: The Weighted Ensemble Simulation Toolkit with Parallelization and Analysis
zol
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
tidysdm
R package to fit species distribution models (SDMs) using the 'tidymodels' framework
jupyterquiz
An interactive Quiz generator for Jupyter notebooks and Jupyter Book
triton
:whale: Scripps Whale Acoustics Lab :earth_americas: Scripps Acoustic Ecology Lab - Triton with remoras in development
torch-hd
Torchhd is a Python library for Hyperdimensional Computing and Vector Symbolic Architectures
HOODESolver.jl
HOODESolver.jl: A Julia package for highly oscillatory problems - Published in JOSS (2021)
darwincat
Shiny app visualizing the effects of carbonate stratigraphy on trait evolution
gis-python-power
Demonstration of the power of Python for GIS and Geosciences.
vpts-csv
Data exchange format for biological signals detected by weather radars
wgan-supported-augmentation
Morphological Classification of Radio Galaxies with wGAN-supported Augmentation
udf-bioutils
Bioinformatics related user-defined functions for Cloudera Impala.
mrsoil
Package contains soil organic carbon cycling model based on IPCC Guidelines 2019 for data prepared in the madrat universe.
smart-agriculture-datasets
https://github.com/alan-turing-institute/paqarin
Python package for the generation and evaluation of synthetic time-series data.
geo-trax
🚀 Geo-trax is a comprehensive pipeline for extracting and analyzing high-accuracy georeferenced vehicle trajectories from quasi-stationary, bird’s-eye view drone footage. Using advanced computer vision and deep learning, it enables detailed urban traffic analysis and supports scalable, precise studies of vehicle dynamics.
node-pathogens-portal
This toolbox contains minimal code for a Pathogens Portal Node (PPN). You can view a demo site at the URL below
karyoploteR
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
epiNEM
Epistatic Nested Effects Models - https://doi.org/10.1371/journal.pcbi.1005496 - https://bioconductor.org/packages/epiNEM/
cmip6-cookbook
Examples of analysis of Google Cloud CMIP6 data using Pangeo tools
sctransform
R package for modeling single cell UMI expression data using regularized negative binomial regression
eprints2bags
Download records and documents from an EPrints server and put them in BagIt format.
astroml
Machine learning, statistics, and data mining for astronomy and astrophysics
UnitCommitment
Optimization package for the Security-Constrained Unit Commitment Problem
phys2cvr
python module to compute cerebrovascular reactivity mapping and other related maps
guardrails
VSCode extension to help developers set up guardrails around their functions, by helping them disambiguate purpose statements.
osai_ecosystem
A community-curated list of Open and Sustainable AI (OSAI) ecosystem components mapped to practical recommendations to guide their use for research.
zho-tts
Web app, command-line interface and Python library for synthesizing Chinese texts into speech.
autotuning_methodology
This software package accompanies the paper "A Methodology for Comparing Auto-Tuning Optimization Algorithms" (https://doi.org/10.1016/j.future.2024.05.021), making the guidelines in the methodology easy to apply.
finbif
R interface for the Finnish Biodiversity Information Facility (FinBIF) API
LabelledArrays
Arrays which also have a label for each element for easy scientific machine learning (SciML)
genometric.mspc.core
Using combined evidence from replicates to evaluate ChIP-seq peaks
pytorch-benchmark
Easily benchmark PyTorch model FLOPs, latency, throughput, allocated gpu memory and energy consumption
roiextractors
Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
pytorchts
PyTorch based Probabilistic Time Series forecasting framework based on GluonTS backend
microsoft.coyote
Coyote is a library and tool for testing concurrent C# code and deterministically reproducing bugs.
dgmr
Implementation of DeepMind's Deep Generative Model of Radar (DGMR) https://arxiv.org/abs/2104.00954
radis
🌱 A fast line-by-line code for high-resolution infrared molecular spectra
llms-from-scratch
Implement a ChatGPT-like LLM in PyTorch from scratch, step by step
menetools
MeneTools are Python3 tools to explore the topology of metabolic networks. It includes Menecheck, Menescope, Menepath and Menecof.
fooddatacentral
Python code to obtain information from the USDA's Food Data Central data project.
rzk
An experimental proof assistant based on a type theory for synthetic ∞-categories.
kedro
Kedro is a toolbox for production-ready data science. It uses software engineering best practices to help you create data engineering and data science pipelines that are reproducible, maintainable, and modular.
https://github.com/moble/quaternion
Add built-in support for quaternions to numpy
lavaca-nutrients
Data and code repository for Lavaca Bay nutrient loading project.
reproducibility-icwsm25
Materials for the 2025 ICWSM workshop sessions on Computational Reproducibility and the Methods Hub
des_agent
An AI agent that can discovery, run, experiment, and report results from any DES model setup as a MCP server.
lintf2_ether_ana_postproc
Analysis postprocessing utilities for my molecular dynamics simulations of LiTFSI-Ether mixtures
henkes_gan
Code of the publication "Three-dimensional microstructure generation using generative adversarial neural networks in the context of continuum micromechanics" published in https://doi.org/10.1016/j.cma.2022.115497 by Alexander Henkes and Henning Wessels from TU Braunschweig.
english-text-normalization
Command-line interface (CLI) and library to normalize English texts.
nightshift
A python library and command line program for plotting simulated 2D and 3D NMR spectra from assigned chemical shifts from the BMRB
