logisim-evolution • Rank 13.6 • Science 54%

Digital logic design tool and simulator

gsee • Rank 10.6 • Science 57%

GSEE: Global Solar Energy Estimator

xemc3 • Rank 8.5 • Science 59%

A library for working with EMC3 simulations using the xarray framework.

shiny • Rank 23.5 • Science 44%

Shiny for Python

circlator • Rank 13.5 • Science 54%

A tool to circularize genome assemblies

pyjams • Rank 8.5 • Science 59%

A general Python package with miscellaneous utility functions used in several other packages.

https://github.com/broadinstitute/tensorqtl • Rank 13.5 • Science 54%

Ultrafast GPU-enabled QTL mapper

navix • Rank 13.5 • Science 54%

Accelerated minigrid environments with JAX

git-fame • Rank 18.5 • Science 49%

:star: Pretty-print `git` repository collaborators sorted by contributions

PureCN • Rank 18.5 • Science 49%

Copy number calling and variant classification using targeted short read sequencing

https://github.com/fgnt/padertorch • Rank 13.5 • Science 54%

A collection of common functionality to simplify the design, training and evaluation of machine learning models based on pytorch with an emphasis on speech processing.

@stdlib/random-base-poisson • Rank 10.5 • Science 57%

Poisson distributed random numbers.

mattersim • Rank 21.5 • Science 46%

MatterSim: A deep learning atomistic model across elements, temperatures and pressures.

@stdlib/random-base-box-muller • Rank 10.5 • Science 57%

Normally distributed pseudorandom numbers using the Box-Muller transform.

compas • Rank 21.5 • Science 46%

Main library of the COMPAS framework and CAD integrations for Rhino/GH and Blender.

spherical • Rank 13.5 • Science 54%

Evaluate and transform D matrices, 3-j symbols, and (scalar or spin-weighted) spherical harmonics

oceanmesh2d • Rank 8.5 • Science 59%

A two-dimensional triangular mesh generator with pre- and post-processing utilities written in pure MATLAB (no toolboxes required) designed specifically to build models that solve shallow-water equations or wave equations in a coastal environment (ADCIRC, FVCOM, WaveWatch3, SWAN, SCHISM, Telemac, etc.).

seriation • Rank 18.4 • Science 49%

Infrastructure for Ordering using Seriation - R Package

urban-and-regional-planning-resources • Rank 8.4 • Science 59%

Community list of data & technology resources concerning the built environment and communities. 🏙️🌳🚌🚦🗺️

ismn • Rank 13.4 • Science 54%

Readers for the data from the International Soil Moisture Network

odis-arch • Rank 8.4 • Science 59%

Development of the Ocean Data and Information System (ODIS) architecture

@stdlib/random-base-gamma • Rank 10.4 • Science 57%

Gamma distributed pseudorandom numbers.

@stdlib/random-base-hypergeometric • Rank 10.4 • Science 57%

Hypergeometric distributed pseudorandom numbers.

molplotly • Rank 13.4 • Science 54%

add-on to plotly which show molecule images on mouseover!

linemap • Rank 5.4 • Science 62%

Create maps made of (ridge) lines

phables • Rank 10.4 • Science 57%

🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes

adf-bdd-bin • Rank 13.4 • Science 54%

Abstract Dialectical Frameworks solved by Binary Decision Diagrams; developed in Dresden (ADF-BDD)

https://github.com/timeseriesai/tsai • Rank 21.4 • Science 46%

Time series Timeseries Deep Learning Machine Learning Python Pytorch fastai | State-of-the-art Deep Learning library for Time Series and Sequences in Pytorch / fastai

Spectra • Rank 18.4 • Science 49%

Low level infrastructure to handle MS spectra

dd • Rank 18.4 • Science 49%

Binary Decision Diagrams (BDDs) in pure Python and Cython wrappers of CUDD, Sylvan, and BuDDy

biomarkovchains.jl • Rank 3.4 • Science 64%

Representing biological sequences as Markov chains

ggmap • Rank 21.4 • Science 46%

A package for plotting maps in R with ggplot2

BaseSet • Rank 10.4 • Science 57%

Provides classes for working with sets

https://github.com/wmd-group/pdyna • Rank 8.4 • Science 59%

Python package to analyse the structural dynamics of perovskites

reproducible • Rank 13.4 • Science 54%

A set of tools for R that enhance reproducibility beyond package management

i-pi • Rank 18.4 • Science 49%

i-PI: a universal force engine

qbraid-qir • Rank 13.4 • Science 54%

qBraid-SDK QIR transpiler integration

UCell • Rank 18.3 • Science 49%

Gene set scoring for single-cell data

OneSampleMR • Rank 10.3 • Science 57%

R package of useful functions for one-sample Mendelian randomization and instrumental variable analyses

pydatapipeline • Rank 8.3 • Science 59%

Python Implementation of the FAIR Data Pipeline API

torchopenl3 • Rank 10.3 • Science 57%

https://github.com/blinkdl/chatrwkv • Rank 21.3 • Science 46%

ChatRWKV is like ChatGPT but powered by RWKV (100% RNN) language model, and open source.

intake-esm • Rank 18.3 • Science 49%

An intake plugin for parsing an Earth System Model (ESM) catalog and loading assets into xarray datasets.

kokkos • Rank 13.3 • Science 54%

Kokkos C++ Performance Portability Programming Ecosystem: The Programming Model - Parallel Execution and Memory Abstraction

hp35-desres • Rank 2.3 • Science 65%

DESRES trajectory of wild type HP-35 at 360K

bwsample — Peer-reviewed • Rank 8.3 • Science 59%

bwsample: Processing Best-Worst Scaling data - Published in JOSS (2021)

pycap • Rank 18.3 • Science 49%

REDCap in Python

libosqp • Rank 13.3 • Science 54%

The Operator Splitting QP Solver

https://github.com/astropy/pytest-arraydiff • Rank 18.3 • Science 49%

pytest plugin to facilitate comparison of results to a pre-defined reference

bambu • Rank 18.3 • Science 49%

Reference-guided transcript discovery and quantification for long read RNA-Seq data

https://github.com/wwu-mmll/photonai • Rank 13.3 • Science 54%

PHOTONAI is a high level python API for designing and optimizing machine learning pipelines.

clearscreen • Rank 23.3 • Science 44%

Cross-platform terminal screen clearing library

pika • Rank 8.3 • Science 59%

pika is a C++ tasking library built on std::execution with fibers, CUDA, HIP, and MPI support.

mizer • Rank 13.3 • Science 54%

Multi-species size-based ecological modelling in R

vermouth-martinize • Rank 8.3 • Science 59%

Describe and apply transformation on molecular structures and topologies

macs2 • Rank 18.3 • Science 49%

MACS -- Model-based Analysis of ChIP-Seq

dales • Rank 8.2 • Science 59%

Dutch Atmospheric Large-Eddy Simulation model

NorESM • Rank 8.2 • Science 59%

Norwegian Earth System Model

kats • Rank 23.2 • Science 44%

Kats, a kit to analyze time series data, a lightweight, easy-to-use, generalizable, and extendable framework to perform time series analysis, from understanding the key statistics and characteristics, detecting change points and anomalies, to forecasting future trends.

@stdlib/random-base-minstd-shuffle • Rank 10.2 • Science 57%

A linear congruential pseudorandom number generator (LCG) whose output is shuffled.

minieuso_cpu • Rank 3.2 • Science 64%

The Mini-EUSO instrument software

isis3 • Rank 10.2 • Science 57%

Integrated Software for Imagers and Spectrometers v3. ISIS3 is a digital image processing software package to manipulate imagery collected by current and past NASA and International planetary missions.

sssegmentation • Rank 13.2 • Science 54%

SSSegmentation: An Open Source Supervised Semantic Segmentation Toolbox Based on PyTorch.

@stdlib/math-base-special-gcd • Rank 10.2 • Science 57%

Compute the greatest common divisor (gcd).

stoqs • Rank 8.2 • Science 59%

Geospatial database visualization software for oceanographic measurement data

https://github.com/pycalphad/scheil • Rank 8.2 • Science 59%

A Scheil-Gulliver simulation tool using pycalphad.

@stdlib/stats-base-variancepn • Rank 10.2 • Science 57%

Calculate the variance of a strided array using a two-pass algorithm.

elpv-dataset • Rank 10.2 • Science 57%

A dataset of functional and defective solar cells extracted from EL images of solar modules

libeantic • Rank 8.2 • Science 59%

Embedded algebraic number fields

grass • Rank 3.2 • Science 64%

A testbed for stellar granulation in exoplanet RV searches.

Egret • Rank 18.2 • Science 49%

Tools for building power systems optimization problems

libint • Rank 13.2 • Science 54%

Libint: high-performance library for computing Gaussian integrals in quantum mechanics

ohun • Rank 10.2 • Science 57%

Automatic detection of acoustic signals

bunkai • Rank 13.2 • Science 54%

Sentence boundary disambiguation tool for Japanese texts (日本語文境界判定器)

pixelgen-pixelator • Rank 10.1 • Science 57%

A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) and Proximity Network (PNA) assays.

riskRegression • Rank 18.1 • Science 49%

R package for risk regression and prediction with censored data

logpai • Rank 18.1 • Science 49%

A machine learning toolkit for log parsing [ICSE'19, DSN'16]

hyperspy • Rank 21.1 • Science 46%

Multidimensional data analysis

gridemissions • Rank 8.1 • Science 59%

Tools for power sector emissions tracking

lmo • Rank 10.1 • Science 57%

Trimmed L-moments and L-comoments for robust statistics.

ceres-solver • Rank 13.1 • Science 54%

A large scale non-linear optimization library

pyani • Rank 8.1 • Science 59%

Application and Python module for average nucleotide identity analyses of microbes.

perceiver-io • Rank 13.1 • Science 54%

A PyTorch implementation of Perceiver, Perceiver IO and Perceiver AR with PyTorch Lightning scripts for distributed training

mujoco-mpc-24 • Rank 3.1 • Science 64%

24 is the year of the humanoid

https://github.com/pycalphad/pycalphad • Rank 18.1 • Science 49%

CALPHAD tools for designing thermodynamic models, calculating phase diagrams and investigating phase equilibria.

tximeta • Rank 18.1 • Science 49%

Transcript quantification import with automatic metadata detection

ms2query • Rank 13.1 • Science 54%

MS2Query - machine learning assisted library querying of MS/MS spectra

aitemplate • Rank 13.1 • Science 54%

AITemplate is a Python framework which renders neural network into high performance CUDA/HIP C++ code. Specialized for FP16 TensorCore (NVIDIA GPU) and MatrixCore (AMD GPU) inference.

nfstream • Rank 18.1 • Science 49%

NFStream: a Flexible Network Data Analysis Framework.

@stdlib/random-base-beta • Rank 10.0 • Science 57%

Beta distributed pseudorandom numbers.

gandetection • Rank 3.0 • Science 64%

Detecting GAN generated Images using Convolutional Neural Networks

scrattch.bigcat • Rank 5.0 • Science 62%

iterative clustering pipeline of big single cell datasets.

workflows_for_gh_projects • Rank 5.0 • Science 62%

This Repository provides and maintains a couple of workflow files to support our Lifecycle of an issue. Using the provided files together with an instance of the template project Issue Lifecycle the managing of your issues is nearly fully automated.

docdata • Rank 13.0 • Science 54%

Add structured information to the end of your python docstrings

tidybayes • Rank 18.0 • Science 49%

Bayesian analysis + tidy data + geoms (R package)

@extra-array/arange • Rank 13.0 • Science 54%

An array is a collection of values, stored contiguously.

y-tal • Rank 10.0 • Science 57%

(Your)-Transient Auxiliary Library - Toolkit for simulation and analysis of time-resolved light transport captures - pip install y-tal

awesome-forests • Rank 8.0 • Science 59%

🌳 A curated list of ground-truth forest datasets for the machine learning and forestry community.

mctq • Rank 10.0 • Science 57%

☀️ An R Package for the Munich ChronoType Questionnaire

simpful • Rank 18.0 • Science 49%

A friendly python library for fuzzy logic reasoning