GitHub
accessible-poverty-estimates
Exploring accessible methods and data to estimate poverty
extra-fyers
A Javascript interface for FYERS API.
https://github.com/zhaokg/rbeast
Bayesian Change-Point Detection and Time Series Decomposition
pmc
:package: Phylogenetic Monte Carlo: Quantifying Uncertainty in Phylogenetic Methods (now on CRAN)
thermopack
Thermopack is a thermodynamic model library for fluid properties and PVT calculations
sigminer
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
https://github.com/microsoft/mattergen
Official implementation of MatterGen -- a generative model for inorganic materials design across the periodic table that can be fine-tuned to steer the generation towards a wide range of property constraints.
shiba-model
Pytorch implementation and pre-trained Japanese model for CANINE, the efficient character-level transformer.
aorsf
aorsf: An R package for supervised learning using the oblique random survival forest - Published in JOSS (2022)
surface-water-network
A Python package to create and analyze surface water networks.
@stdlib/ml-incr-binary-classification
Incrementally perform binary classification using stochastic gradient descent (SGD).
augraphy
Augmentation pipeline for rendering synthetic paper printing, faxing, scanning and copy machine processes
django-sodar-core
SODAR Core: A Django-based framework for building scientific data management web apps
scpubr
Generate high quality, publication ready visualizations for single cell transcriptomics data.
https://github.com/cloudsimplus/cloudsimplus
State-of-the-art Framework 🏗 for Cloud Computing ⛅️ Simulation: a modern, full-featured, easier-to-use, highly extensible 🧩, faster 🚀 and more accurate ☕️ Java 24+ tool for cloud computing research 🎓 Examples: https://github.com/cloudsimplus/cloudsimplus-examples
cellphonedb
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
magic-impute
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
GRFolres
GRFolres: A code for modified gravity simulations in strong gravity - Published in JOSS (2024)
https://github.com/aise-tudelft/tiny-transformers
Q4-2024 Bachelor Research Project: Architectural Decisions for Language Modelling with (Small) Transformers
pcntoolkit
Toolbox for normative modelling and spatial inference of neuroimaging data. https://pcntoolkit.readthedocs.io/en/latest/
camtrapml
📷🦔 CamTrapML Python Library for Detecting, Classifying, and Analysing Camera Trap Imagery.
spectral-recovery
Spectral recovery analysis for forested ecosystems in Python. Part of the PEOPLE-ER project.
https://github.com/astropy/pytest-openfiles
Pytest plugin to check for files left open at the end of a test run
vitpose
The official repo for [NeurIPS'22] "ViTPose: Simple Vision Transformer Baselines for Human Pose Estimation" and [TPAMI'23] "ViTPose++: Vision Transformer for Generic Body Pose Estimation"
SciMLExpectations
Fast uncertainty quantification for scientific machine learning (SciML) and differential equations
iglu
R package for Interpreting GLUcose data from CGMs (Continuous Glucose Monitors)
pandas-association-measures
Statistical association measures for Python pandas
BoxKit
BoxKit: A Python library to manage analysis of block-structured simulation datasets - Published in JOSS (2023)
skosprovider-sqlalchemy
An implementation of the skosprovider interface against SQLAlchemy.
ebltable
Python package to read in tabulated photon densities and gamma-ray opacities
https://github.com/biomedsciai/causallib
A Python package for modular causal inference analysis and model evaluations
konigcell
Quantitative, Fast Grid-Based Fields Calculations in 2D and 3D - Residence Time Distributions, Velocity Grids, Eulerian Cell Projections etc.
@stdlib/blas-ext-base-ssumpw
Calculate the sum of single-precision floating-point strided array elements using pairwise summation.
qpcr
A python package to analyse qPCR data for single-use or high-throughput application
gammaalps
A python code to calculate the conversion probability between photons and axions / axionlike particles
https://github.com/pycroscopy/atomai
Deep and Machine Learning for Microscopy
setuptools-generate
Generate shell completions and man page when building a python package.
@stdlib/blas-ext-base-dapxsumkbn
Add a constant to each double-precision floating-point strided array element and compute the sum using an improved Kahan–Babuška algorithm.
https://github.com/bluescarni/heyoka.py
Python library for ODE integration via Taylor's method and LLVM
tno.mpc.protocols.secure-comparison
TNO PET Lab - secure Multi-Party Computation (MPC) - Protocols - Secure Comparison
exponentialutilities.jl
Fast and differentiable implementations of matrix exponentials, Krylov exponential matrix-vector multiplications ("expmv"), KIOPS, ExpoKit functions, and more. All your exponential needs in SciML form.
https://github.com/p-j-smith/lipyphilic
A Python toolkit for the analyis of lipid membrane simulations
FSA
FSA (Fisheries Stock Assessment) package provides R functions to conduct typical introductory fisheries analyses.
multiscalebrainparcellator
Multi-Scale Brain Parcellator, part of the Connectome Mapping Toolkit (CMTK), is a BIDS App that implements a full anatomical MRI processing pipeline, from raw T1w data to structural brain parcellation at five different scales.
https://github.com/chendaniely/cdcepi-zika-data_only
cdcepi zika data repository containing only the data files
auth_capture_proxy
A Python project for capturing auth credentials using a proxy.
@stdlib/blas-ext-base-dnannsumpw
Calculate the sum of double-precision floating-point strided array elements, ignoring NaN values and using pairwise summation.
isogeochem
isogeochem makes working with carbonate oxygen, carbon, and clumped isotope data reproducible and straightforward. Use it to quickly calculate isotope fractionation factors, and apply paleothermometry equations.
pytensor-federated
Distributed differentiable graph computation using PyTensor
CARNIVAL
CAusal Reasoning for Network Identification with integer VALue programming in R
phishing-dataset
Phishing dataset with more than 88,000 instances and 111 features. Web application available at. https://gregavrbancic.github.io/Phishing-Dataset/
4dnmetadataschemaxsd2jsonconverter
This is a converter written in Java that translates an XSD microscopy metadata schema into JSON
MsBackendRawFileReader
Spectra MsBackend for Thermo Fisher Scientific's New RawFileReader
dagmc-h5m-file-inspector
Extracts information from DAGMC h5m files including volumes number, material tags
https://github.com/bayer-group/tiffslide
TiffSlide - cloud native openslide-python replacement based on tifffile
fft-conv-pytorch
Implementation of 1D, 2D, and 3D FFT convolutions in PyTorch. Much faster than direct convolutions for large kernel sizes.
tmu
Implements the Tsetlin Machine, Coalesced Tsetlin Machine, Convolutional Tsetlin Machine, Regression Tsetlin Machine, and Weighted Tsetlin Machine, with support for continuous features, drop clause, Type III Feedback, focused negative sampling, multi-task classifier, autoencoder, literal budget, and one-vs-one multi-class classifier. TMU is written in Python with wrappers for C and CUDA-based clause evaluation and updating.
