GitHub
qspace_deep_learning
Implementation codes for "Jointly estimating parametric maps of multiple diffusion models"
smesh
A simple Fortran package for generating and handling unstructured triangular and polygonal meshes
workshop_data_reuse
Data reuse saves time and accelerates the pace of scientific discovery. But how do you actually reuse the data that you put in repositories? This is a 4 hour workshop tailored to the ocean sciences. We aim to teach the basics of data reuse using ERDDAP servers maintained by ocean science specific repo's and programs and pulling these data into the Python environment.
twitter-graph
Fetch and visualize the graph of your Twitter friends and followers.
TIGERr
Technical variation elimination for metabolomics data using ensemble learning architecture
mixmod
Supervised, unsupervised and semi-supervised classification with mixture modelling
WMWssp
R package for sample size calculation for the Wilcoxon-Mann-Whitney test.
msapy
Hopefully, a compact and general-purpose Python package for Multiperturbation Shapley value Analysis (MSA).
intermediate-software-dev-r
Repo for the intermediate software development lessons in R
rnachipintegrator
RnaChipIntegrator is a utility that performs integrated analyses of 'gene' data (a set of genes or other genomic features) with 'peak' data (a set of regions, for example ChIP peaks) to identify the genes nearest to each peak, and vice versa
sauterschwab3d.jl
Sauter&Schwab quadrature rules for singular tetrahedron-tetrahedron, tetrahedron-triangle and triangle-triangle interaction integrals.
rcbs.py
RCBS.py (Reactivity of Chemical and Biochemical Systems) is a Python package that contains several scripts, functions and classes that simplify the analysis of chemical and biochemical simulations.
fairdatapoint-client
Interact with your resources (catalogs/datasets/distributions) in a FDP using python
lidar-notebooks
A series of jupyter notebook pipelines for processing lidar point clouds (LAS files) and deriving vegetation structure metrics.
pythea
PyThea is an open-source software package to perform coronal mass ejection (CME) and shock wave 3D reconstruction using multi-viewpoint remote-sensing observations.
cad-to-dagmc
Convert CAD geometry (STP files) or Cadquery assemblies to DAGMC h5m files
wholeslidedata
A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
pdielec
PDielec is a Python package for post-processing solid state QM and MM calculations of Infrared Spectra
WaveBreaking
Detect, classify, and track Rossby Wave Breaking (RWB) in weather and climate data.
dotpath
A Go, Python and TypeScript modules for working with map, dicts and objects accessing them using a dot path notation.
QuantumFluidSpectra
Fast, accurate, and flexible spectral analysis for compressible quantum fluids
epiparameterdashboard
Explore the database of epidemiological parameters provided by the {epiparameterDB} package
plc2skill
PLC2Skill is an automated method to generate skill models in the form of an ontology from existing PLC code.
KraljicMatrix
KraljicMatrix: An R package for implementing the Kraljic Matrix to strategically analyze a firm’s purchasing portfolio - Published in JOSS (2017)
KielMAT
KielMAT: Kiel Motion Analysis Toolbox - An Open-Source Python Toolbox for Analyzing Neurological Motion Data from Various Recording Modalities - Published in JOSS (2024)
3D Line Radiative Transfer & Synthetic Observations with Magritte
3D Line Radiative Transfer & Synthetic Observations with Magritte - Published in JOSS (2022)
https://github.com/arogozhnikov/demuxalot
Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing
snl-quest
An open source, Python-based software platform for energy storage simulation and analysis developed by Sandia National Laboratories.
vespa
Validation of Exoplanet Signals using a Probabilistic Algorithm--- calculating false positive probabilities for transit signals
https://github.com/google-deepmind/ithaca
Restoring and attributing ancient texts using deep neural networks
tadar
R package for Transcriptome Analysis of Differential Allelic Representation
jupyterlab-display-name
JupyterLab server extension that adds a display name field to the login page.
https://github.com/climateimpactlab/dscim
Data-Driven Spatial Climate Impact Model core component code
@stdlib/number-float64-base-get-low-word
Return an unsigned 32-bit integer corresponding to the less significant 32 bits of a double-precision floating-point number.
@stdlib/math-base-special-gamma-lanczos-sum-expg-scaled
Calculate a scaled Lanczos sum for the approximation of the gamma function.
@stdlib/math-base-special-sqrt
Compute the principal square root of a double-precision floating-point number.
rl-testbed-for-energyplus
Reinforcement Learning Testbed for Power Consumption Optimization using EnergyPlus
@stdlib/string-base-replace
Replace search occurrences with a replacement string.
pystorms
Simulation Sandbox for the Design and Evaluation of Stormwater Control Algorithms
packages
Aim to be the bioinformatics repository with more and newer packages https://doi.org/10.1093/bioinformatics/btaf106
awesome-lwms
A Collection of Awesome Large Weather Models (LWMs) | AI for Earth (AI4Earth) | AI for Science (AI4Science)
https://github.com/m3g/complexmixtures.jl
Package to perform minimum-distance distribution analyses of complex solute-solvent interactions
grainscape
Efficient Modelling of Landscape Connectivity, Habitat, and Protected Area Networks
@stdlib/math-base-special-trunc
Round a double-precision floating-point number toward zero.