casadi • Rank 24.9 • Science 54%

CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python or Matlab/Octave.

fteikpy • Rank 11.9 • Science 67%

Accurate Eikonal solver for Python

adapters • Rank 24.9 • Science 54%

A Unified Library for Parameter-Efficient and Modular Transfer Learning

deerlab • Rank 11.9 • Science 67%

Python package for data analysis for dipolar EPR spectroscopy

pycrystal • Rank 11.9 • Science 67%

Utilities for ab initio modeling suite CRYSTAL, developed in Turin University

ap-features • Rank 11.9 • Science 67%

Package to compute features of traces from action potential models

VoronoiFVM • Rank 11.8 • Science 67%

Solution of nonlinear multiphysics partial differential equation systems using the Voronoi finite volume method

bluepymm • Rank 11.8 • Science 67%

Blue Brain Python Cell Model Management

sxs • Rank 14.8 • Science 64%

Python code for manipulating data from the SXS collaboration

egttools • Rank 11.8 • Science 67%

Toolbox for Evolutionary Game Theory.

etsi_its_messages • Rank 6.8 • Science 72%

ROS / ROS 2 Support for ETSI ITS Messages for V2X Communication

rrtmgp-data • Rank 1.8 • Science 77%

Data for RRTMGP gas optics; compatible cloud and aerosol optics

lyoluminescenceapp • Rank 1.8 • Science 77%

Lyoluminescence Shiny App

the-plunging-flow-by-3d-les • Rank 1.8 • Science 77%

The Plunging of Hyperpycnal Plumes on Tilted Bed by Three-Dimensional Large-Eddy Simulations

toe_tmin-tmax • Rank 1.8 • Science 77%

Timing of emergence of CONUS summertime temperatures

turtle-fecundity • Rank 1.8 • Science 77%

Paper - Scaling of sea turtle reproduction reconciles theory and conservation strategies at the global scale

sustainable-communities-tracker • Rank 1.8 • Science 77%

sustainable-communities-tracker

zividomelive • Rank 1.8 • Science 77%

A Processing Library to facilitates the creation of immersive live visual experiences for fulldome projections.

tfer-pma • Rank 1.8 • Science 77%

Code in multiple languages to evaluate the transfer function for particle mass analyzers (including the APM and CPMA), including a web app and Matlab version (cf. github.com/tsipkens/mat-tfer-pma).

doi-check-app • Rank 1.8 • Science 77%

A GitHub app that checks for DOI links in the README.md file of a repository and warns the user if no DOI is found.

seekpath • Rank 19.8 • Science 59%

A module to obtain and visualize k-vector coefficients and obtain band paths in the Brillouin zone of crystal structures

lifewatch-pypam • Rank 11.8 • Science 67%

Python Passive Acoustic Analysis tool for Passive Acoustic Monitoring (PAM)

drugbank-downloader • Rank 11.8 • Science 67%

Don't worry about DrugBank licensing - write code that knows how to download it automatically

igraph • Rank 14.8 • Science 64%

Library for the analysis of networks

mdftracks • Rank 11.7 • Science 67%

R package for reading and writing MTrackJ Data Format (.mdf) files

eurostat • Rank 19.7 • Science 59%

R tools for Eurostat data

gymnasium • Rank 32.7 • Science 46%

An API standard for single-agent reinforcement learning environments, with popular reference environments and related utilities (formerly Gym)

actipy • Rank 11.7 • Science 67%

Python Software Development Kit (SDK) to process wearable sensor data

buteo • Rank 11.7 • Science 67%

Buteo - Geospatial Analysis Meets AI

downstream • Rank 11.7 • Science 67%

downstream provides efficient, constant-space implementations of stream curation algorithms.

https://github.com/alan-turing-institute/clevercsv • Rank 21.7 • Science 57%

CleverCSV is a Python package for handling messy CSV files. It provides a drop-in replacement for the builtin CSV module with improved dialect detection, and comes with a handy command line application for working with CSV files.

differt • Rank 11.7 • Science 67%

Differentiable Ray Tracing Toolbox for Radio Propagation Simulations

sbx-rl • Rank 14.7 • Science 64%

SBX: Stable Baselines Jax (SB3 + Jax) RL algorithms

vcfexpress • Rank 11.7 • Science 67%

expressions on VCFs

cuvec • Rank 11.7 • Science 67%

Unifying Python/C++/CUDA memory: Python buffered array ↔️ `std::vector` ↔️ CUDA managed memory

cplot • Rank 11.6 • Science 67%

:rainbow: Plot complex functions

ParetoSmooth • Rank 11.6 • Science 67%

An implementation of PSIS algorithms in Julia.

spectrafit • Rank 11.6 • Science 67%

📊📈🔬 SpectraFit is a command-line and Jupyter-notebook tool for quick data-fitting based on the regular expression of distribution functions.

alexandria3k • Rank 11.6 • Science 67%

Fast relational access to openly-available publication data sets

ipal_evaluate • Rank 1.6 • Science 77%

Intrusion Detection Evaluation - A framework to evalute (Industrial) Intrusion Detection Systems.

cbssuitabilityhaiti • Rank 1.6 • Science 77%

Data for a sanitation zoning assessment prepared for the city of Cap Haitien, Haiti. The package combines two datasets used for an analysis of the suitability of container-based sanitation (CBS)

alkahest • Rank 1.6 • Science 77%

Pre-Processing XY Data from Experimental Methods - :exclamation: This is a read-only mirror from https://codeberg.org/tesselle/alkahest

dpe • Rank 1.6 • Science 77%

Distribution Proportion Estimation

daceml • Rank 6.6 • Science 72%

A Data-Centric Compiler for Machine Learning

faer • Rank 24.6 • Science 54%

Linear algebra foundation for the Rust programming language

rfaas • Rank 6.6 • Science 72%

rFaaS: a high-performance FaaS platform with RDMA acceleration for low-latency invocations.

maptiles • Rank 16.6 • Science 62%

Download, compose and display map tiles with R

proteinworkshop • Rank 11.6 • Science 67%

Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)

bootstrapping-for-bqsr • Rank 3.6 • Science 75%

Bootstrap a variant resource for non-model organisms that lack known variant databases. This is to enable GATK Base Quality Score Recalibration (BQSR) to be performed for improved variant calls.

cromwell • Rank 16.6 • Science 62%

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

en-transformer • Rank 11.6 • Science 67%

Implementation of E(n)-Transformer, which incorporates attention mechanisms into Welling's E(n)-Equivariant Graph Neural Network

instanovo • Rank 11.6 • Science 67%

De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments

imodelsx • Rank 14.5 • Science 64%

Interpret text data using LLMs (scikit-learn compatible).

pysplishsplash • Rank 16.5 • Science 62%

SPlisHSPlasH is an open-source library for the physically-based simulation of fluids.

glmGamPoi • Rank 19.5 • Science 59%

Fit Gamma-Poisson Generalized Linear Models Reliably

imsy-htc • Rank 11.5 • Science 67%

Semantic organ segmentation for hyperspectral images.

jsonargparse • Rank 24.5 • Science 54%

Implement minimal boilerplate CLIs derived from type hints and parse from command line, config files and environment variables

pandas-ai • Rank 24.5 • Science 54%

Chat with your database or your datalake (SQL, CSV, parquet). PandasAI makes data analysis conversational using LLMs and RAG.

cytoscape-autopan-on-drag • Rank 13.5 • Science 65%

A Cytsocape.js extension to automatically pan when nodes are out of canvas bounds

https://github.com/chains-project/dirty-waters • Rank 11.5 • Science 67%

automatically detect software supply chain smells and issues http://arxiv.org/pdf/2410.16049

SciMLBenchmarks • Rank 11.5 • Science 67%

Scientific machine learning (SciML) benchmarks, AI for science, and (differential) equation solvers. Covers Julia, Python (PyTorch, Jax), MATLAB, R

overlap • Rank 11.5 • Science 67%

Exact calculation of the overlap volume and area of spheres and mesh elements

FrankWolfe • Rank 11.5 • Science 67%

Julia implementation for various Frank-Wolfe and Conditional Gradient variants

mapeathor • Rank 11.5 • Science 67%

Translator of spreadsheet mappings into R2RML, RML or YARRRML

pynrrd • Rank 19.5 • Science 59%

Simple pure-python module for reading and writing nrrd files.

https://github.com/bluebrain/diameter-synthesis • Rank 3.5 • Science 75%

Synthesize diameters of neuronal morphologies

skorch • Rank 24.5 • Science 54%

A scikit-learn compatible neural network library that wraps PyTorch

niaaml • Rank 11.5 • Science 67%

Python automated machine learning framework.

mmpose • Rank 24.4 • Science 54%

OpenMMLab Pose Estimation Toolbox and Benchmark.

orthoseg • Rank 11.4 • Science 67%

OrthoSeg makes it easy to train neural networks to segment orthophotos.

cuclarabel • Rank 6.4 • Science 72%

ford • Rank 19.4 • Science 59%

Automatically generates FORtran Documentation from comments within the code.

torchinfo • Rank 24.4 • Science 54%

View model summaries in PyTorch!

bpa-meta-analysis • Rank 1.4 • Science 77%

Paper - Effect of the plastic pollutant bisphenol A on the biology of aquatic organisms: A meta-analysis

tool_vforwater_loader • Rank 1.4 • Science 77%

Tool specification compliant tool to load data from the V-FOR-WaTer database

med_spec • Rank 1.4 • Science 77%

Calculates the median spectra of waveforms from a seismic deployment

psat-ml • Rank 1.4 • Science 77%

Machine Learning code for Pan-STARRS and ATLAS

hep-iris-benchmark-scripts • Rank 1.4 • Science 77%

HEP IRIS benchmark scripts

Turing • Rank 19.4 • Science 59%

Bayesian inference with probabilistic programming.

awesome-virtual-try-on • Rank 11.4 • Science 67%

A curated list of awesome research papers, projects, code, dataset, workshops etc. related to virtual try-on.

voronoi-diagram-for-polygons • Rank 11.4 • Science 67%

A tool to create a Voronoi diagram for polygons

pysr • Rank 14.3 • Science 64%

High-Performance Symbolic Regression in Python and Julia

hanlp • Rank 24.3 • Science 54%

中文分词 词性标注 命名实体识别 依存句法分析 成分句法分析 语义依存分析 语义角色标注 指代消解 风格转换 语义相似度 新词发现 关键词短语提取 自动摘要 文本分类聚类 拼音简繁转换 自然语言处理

buildvac • Rank 3.3 • Science 75%

Workflows and tools for early stage HVAC system design

rcrisp • Rank 11.3 • Science 67%

Automate the morphological delineation of riverside urban areas.

ogs6py • Rank 11.3 • Science 67%

Python-API for the OpenGeoSys (http://www.opengeosys.org) software.

yatter • Rank 11.3 • Science 67%

Translate YARRRML into easy-to-read [R2]RML mappings

pyactigraphy • Rank 11.3 • Science 67%

Python-based open source package for actigraphy data analysis

fsbrain • Rank 11.3 • Science 67%

R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphometry data for individuals and groups.

seb • Rank 11.3 • Science 67%

A Scandinavian Benchmark for sentence embeddings

JSOSolvers • Rank 11.3 • Science 67%

pycharge • Rank 11.3 • Science 67%

Differentiable electromagnetics simulation library for moving point charges built on JAX

motu-profiler • Rank 11.3 • Science 67%

motus - a tool for marker gene-based OTU (mOTU) profiling

umi-tools • Rank 19.3 • Science 59%

Tools for handling Unique Molecular Identifiers in NGS data sets

chmpy • Rank 11.2 • Science 67%

Spherical harmonic shape descriptors, promolecule densities, isosurfaces and Hirshfeld surfaces in python

fairlearn • Rank 24.2 • Science 54%

A Python package to assess and improve fairness of machine learning models.

rembg • Rank 14.2 • Science 64%

Rembg is a tool to remove images background

hexasphere • Rank 24.2 • Science 54%

Subdividing triangle meshes.

natcap.invest • Rank 16.2 • Science 62%

InVEST®: models that map and value the goods and services from nature that sustain and fulfill human life.

armory-library • Rank 11.2 • Science 67%

Python library for Adversarial ML Evaluation