metacluster • Rank 6.5 • Science 67%

MetaCluster: An Open-Source Python Library for Metaheuristic-based Clustering Problems

geocontour • Rank 6.5 • Science 67%

Utilities for masking, contour tracing, and geocontour construction with gridded geographic data

ckanext-doi • Rank 11.5 • Science 62%

A CKAN extension for assigning a digital object identifier (DOI) to datasets, using the DataCite DOI service.

https://github.com/manodeep/corrfunc • Rank 14.5 • Science 59%

⚡️⚡️⚡️Blazing fast correlation functions on the CPU.

https://github.com/torchmd/torchmd-net • Rank 14.5 • Science 59%

Training neural network potentials

netcdf-c • Rank 11.5 • Science 62%

Official GitHub repository for netCDF-C libraries and utilities.

r-tcpl • Rank 14.5 • Science 59%

US EPA's Toxicity Forecaster (ToxCast) Pipeline. More information on the ToxCast program available here: https://www.epa.gov/comptox-tools/toxicity-forecasting-toxcast

netlogo • Rank 11.5 • Science 62%

turtles, patches, and links for kids, teachers, and scientists

PythonCall • Rank 19.5 • Science 54%

Python and Julia in harmony.

dicfg • Rank 6.5 • Science 67%

Dicfg is a configuration system that supports dependency injection via object interpolation in config files.

metabolinks • Rank 6.4 • Science 67%

A set of tools for high-resolution MS metabolomics data analysis

zarrs • Rank 19.4 • Science 54%

A Rust library for the Zarr storage format for multidimensional arrays and metadata

@dodona/dolos • Rank 16.4 • Science 57%

:detective: Source code plagiarism detection

recmap • Rank 14.4 • Science 59%

draw rectangular statistical cartograms - CRAN package

scs • Rank 11.4 • Science 62%

Splitting Conic Solver

good-enough-practices • Rank 6.4 • Science 67%

Good Enough Practices in Scientific Computing

pysb-pkpd • Rank 6.4 • Science 67%

PySB add-on providing domain-specific macros and models for empirical and mechanistic PK/PD modeling.

knowprompt • Rank 6.4 • Science 67%

[WWW 2022] KnowPrompt: Knowledge-aware Prompt-tuning with Synergistic Optimization for Relation Extraction

voc4cat • Rank 9.4 • Science 64%

A tool for creating and maintaining SKOS-vocabularies with Excel and GitHub.

mps-motion • Rank 6.4 • Science 67%

Library for tracking motion in cardiac mps data

2d_tile_detector • Rank 1.4 • Science 72%

Minimal, OpenCV-based library for detecting 2d pose of tiles

luct • Rank 1.4 • Science 72%

tl-fwpi.jl • Rank 1.4 • Science 72%

Time-lapse full-waveform permeability inversion: A feasibility study

lavavu • Rank 14.4 • Science 59%

Lightweight, Automatable Visualisation & Analysis Viewing Utility

pypsa • Rank 22.4 • Science 51%

PyPSA: Python for Power System Analysis

https://github.com/threeml/astromodels • Rank 14.4 • Science 59%

Spatial and spectral models for astrophysics

FFTW • Rank 19.4 • Science 54%

Julia bindings to the FFTW library for fast Fourier transforms

showermodel • Rank 6.4 • Science 67%

A Python package for modelling cosmic-ray showers, their light production and their detection

trendpy2 • Rank 6.4 • Science 67%

Time Series Regression with Python

unipacker • Rank 14.4 • Science 59%

Automatic and platform-independent unpacker for Windows binaries based on emulation

coloc • Rank 14.4 • Science 59%

Repo for the R package coloc

pfb-toolkit • Rank 6.4 • Science 67%

A python package to build portable Energy Management and Information Systems (EMIS) application in buildings.

scikit-psl • Rank 8.4 • Science 65%

Scoring Lists – a probabilistic & incremental extension to Scoring Systems

docker-run-cli • Rank 11.4 • Science 62%

'docker run' and 'docker exec' with useful defaults

transformers-interpret • Rank 19.3 • Science 54%

Model explainability that works seamlessly with 🤗 transformers. Explain your transformers model in just 2 lines of code.

accelerated-scan • Rank 6.3 • Science 67%

Accelerated First Order Parallel Associative Scan

gftool • Rank 9.3 • Science 64%

Collection of commonly used Green's functions and utilities

climlab • Rank 14.3 • Science 59%

Python package for process-oriented climate modeling

yuview • Rank 11.3 • Science 62%

The Free and Open Source Cross Platform YUV Viewer with an advanced analytics toolset

jupedsim • Rank 14.3 • Science 59%

JuPedSim is an open source pedestrian dynamics simulator

motulator • Rank 14.3 • Science 59%

Motor Drive and Grid Converter Simulator in Python

msprime • Rank 19.3 • Science 54%

Simulate genealogical trees and genomic sequence data using population genetic models

code-lms • Rank 9.3 • Science 64%

Guide to using pre-trained large language models of source code

@stdlib/stats-incr-kurtosis • Rank 6.3 • Science 67%

Compute a corrected sample excess kurtosis incrementally.

soilDB • Rank 19.3 • Science 54%

soilDB: Simplified Access to National Cooperative Soil Survey Databases

devito • Rank 19.3 • Science 54%

DSL and compiler framework for automated finite-differences and stencil computation

filtersam • Rank 6.3 • Science 67%

Tools to filter SAM/BAM files by percent identity and percent of matched sequence

hisim • Rank 11.3 • Science 62%

HiSim - House Infrastructure Simulator

https://github.com/sintel-dev/orion • Rank 16.3 • Science 57%

Unsupervised time series anomaly detection library

torchcam • Rank 19.3 • Science 54%

Class activation maps for your PyTorch models (CAM, Grad-CAM, Grad-CAM++, Smooth Grad-CAM++, Score-CAM, SS-CAM, IS-CAM, XGrad-CAM, Layer-CAM)

crisprseq • Rank 6.3 • Science 67%

A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).

@i-vresse/pdbtbx-ts • Rank 6.3 • Science 67%

JS wrapper around pdbtbx rust crate

pysecsan • Rank 19.3 • Science 54%

OSS-Fuzz - continuous fuzzing for open source software.

observatory-platform • Rank 9.3 • Science 64%

Observatory Platform Package

virelay • Rank 9.3 • Science 64%

ViRelAy is a visualization tool for the analysis of data as generated by CoRelAy.

drep • Rank 14.3 • Science 59%

Rapid comparison and dereplication of genomes

dg-commons • Rank 9.3 • Science 64%

Driving games common tools

structure-from-motion • Rank 6.3 • Science 67%

Structure from Motion Pipeline

fiasco • Rank 14.3 • Science 59%

Python interface to the CHIANTI atomic database

torch-mlir • Rank 19.3 • Science 54%

The Torch-MLIR project aims to provide first class support from the PyTorch ecosystem to the MLIR ecosystem.

pypolar • Rank 9.3 • Science 64%

Python modules for polarization changes using Jones or Mueller calculus

power-grid-model-io • Rank 6.2 • Science 67%

Conversion tool for various grid data formats to power-grid-model

pangenomics • Rank 6.2 • Science 67%

Pangenome Analysis in Prokaryotes Lesson

maca-python • Rank 6.2 • Science 67%

MACA: Marker-based automatic cell-type annotation for single cell expression data

@digitallinguistics/transliterate • Rank 6.2 • Science 67%

A small JavaScript library for transliterating strings between different orthographies

https://github.com/hackingmaterials/robocrystallographer • Rank 16.2 • Science 57%

Automatic generation of crystal structure descriptions.

pyfortran • Rank 16.2 • Science 57%

Data Assimilation Research Testbed

ncbi-genome-download • Rank 19.2 • Science 54%

Scripts to download genomes from the NCBI FTP servers

pylems • Rank 14.2 • Science 59%

LEMS interpreter implemented in Python

kafe2 • Rank 19.2 • Science 54%

Karlsruhe Fit Environment 2: a Python package for parameter estimation

grand-challenge.org • Rank 9.2 • Science 64%

A platform for end-to-end development of machine learning solutions in biomedical imaging

watem-sedem • Rank 6.2 • Science 67%

WaTEM/SEDEM

ratinabox • Rank 14.2 • Science 59%

A python package for simulating movement and spatial cell types (e.g. place cells, grid cells) in continuous environments.

pyfeats • Rank 6.2 • Science 67%

[GitHub 2021] Open source software for image feature extraction.

manuscript • Rank 6.2 • Science 67%

This repository implements an automated system to write our collaborative manuscript, while tracking changes and contributions.

AlgebraPDF • Rank 6.2 • Science 67%

adding, multiplying density functions, fitting LLH

RecursiveArrayTools • Rank 19.2 • Science 54%

Tools for easily handling objects like arrays of arrays and deeper nestings in scientific machine learning (SciML) and other applications

json2netcdf • Rank 6.2 • Science 67%

Convert JSON files to NetCDF files.

database • Rank 14.2 • Science 59%

Tools for accessing and maintaining the iTEM model & historical databases

mendeleev • Rank 19.1 • Science 54%

A python package for accessing various properties of elements, ions and isotopes in the periodic table of elements.

s2fft • Rank 14.1 • Science 59%

S2FFT: Differentiable and accelerated spherical transforms

https://github.com/bashtage/arch • Rank 24.1 • Science 49%

ARCH models in Python

https://github.com/bigbio/sdrf-pipelines • Rank 14.1 • Science 59%

`sdrf-pipelines` is the official SDRF file validator and converts SDRF to pipeline configuration files

pylette • Rank 6.1 • Science 67%

A Python library for extracting color palettes from supplied images.

https://github.com/bluebrain/neurots • Rank 11.1 • Science 62%

Topological Neuron Synthesis

netket • Rank 19.1 • Science 54%

Machine learning algorithms for many-body quantum systems

nl-causal-representations • Rank 6.1 • Science 67%

This is the code for the paper Jacobian-based Causal Discovery with Nonlinear ICA, demonstrating how identifiable representations (particularly, with Nonlinear ICA) can be used to extract the causal graph from an underlying structural equation model (SEM).

multiprocess • Rank 27.1 • Science 46%

better multiprocessing and multithreading in Python

rxylib • Rank 14.1 • Science 59%

R package: wrapper for the C++ library `xylib`

phys2bids • Rank 14.1 • Science 59%

Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!

incompact3d • Rank 9.1 • Science 64%

Current CPU version of our solver for the Navier-Stokes equations

r-raster-vector-geospatial • Rank 9.1 • Science 64%

Introduction to Geospatial Raster and Vector Data with R

ultrametric_matrix_tools • Rank 9.1 • Science 64%

Toolbox that provides functions and data structures to generate and handle ultrametric matrices.

pie-torch • Rank 9.1 • Science 64%

Fast Python implementations of Poisson image editing, using Pytorch and NumPy.

abagen • Rank 14.1 • Science 59%

A toolbox for working with Allen Human Brain Atlas microarray expression data

eisaR • Rank 14.1 • Science 59%

Exon-Intron Split Analysis (EISA) in R

pyboat • Rank 9.0 • Science 64%

A Biological Oscillations Analysis Toolkit

lim-sample • Rank 6.0 • Science 67%

Implementation of SAMPLE (Spectral Analysis for Modal Parameter Linear Estimate)

mrcommons • Rank 6.0 • Science 67%

nLTT • Rank 14.0 • Science 59%

Repository for the R nLTT package