VectoRose — Peer-reviewed • Science 98%

VectoRose: A new package for analysing and visualising 3D non-unit vectors in Python - Published in JOSS (2025)

bisonpicsuite — Peer-reviewed • Science 93%

bisonpicsuite: A set of R packages to estimate wood bison population parameters from remote camera data. - Published in JOSS (2025)

gaia — Peer-reviewed • Science 100%

gaia: An R package to estimate crop yield responses to temperature and precipitation - Published in JOSS (2025)

firedpy • Science 59%

A Python Command Line Interface for classifying fire events from the Collection 6 MODIS Burned Area Product.

SOILWAT2 • Science 46%

An ecosystem water balance simulation model

tcrm • Science 46%

A statistical-parametric model for assessing wind hazard from tropical cyclones

Lighter — Peer-reviewed • Science 93%

Lighter: Configuration-Driven Deep Learning - Published in JOSS (2025)

3DQLayers — Peer-reviewed • Science 98%

3DQLayers: Volumetric Layer Based Analysis for Quantitative Renal MRI - Published in JOSS (2025)

TurboFlow — Peer-reviewed • Science 93%

TurboFlow: Meanline Modelling of Axial Turbines - Published in JOSS (2025)

access-om2 • Science 46%

Deprecated ACCESS-OM2 global ocean - sea ice coupled model code and configurations.

PointClouds.jl — Peer-reviewed • Science 96%

PointClouds.jl: Fast & flexible processing of lidar data - Published in JOSS (2025)

dpest — Peer-reviewed • Science 98%

dpest: Streamlining Creation of PEST input files for DSSAT Crop Model Calibration - Published in JOSS (2025)

climaccf • Science 57%

Calculation of algorithmic climate change functions.

MEDUSA — Peer-reviewed • Science 93%

MEDUSA: An R tool to model equity and distributional impacts - Published in JOSS (2025)

PlanktoScope • Science 59%

Open and Affordable Quantitative Imaging Platform

AutoUncertainties — Peer-reviewed • Science 93%

AutoUncertainties: A Python Package for Uncertainty Propagation - Published in JOSS (2025)

Solar Data Tools — Peer-reviewed • Science 96%

Solar Data Tools: a Python library for automated analysis of unlabeled PV data - Published in JOSS (2025)

medRCT — Peer-reviewed • Science 93%

medRCT: Causal mediation analysis estimating interventional effects mapped to a target trial in R - Published in JOSS (2025)

Syclops — Peer-reviewed • Science 96%

Syclops: A Modular Pipeline for Procedural Generation of Synthetic Data - Published in JOSS (2025)

RiverFlowDynamics v1.0 — Peer-reviewed • Science 92%

RiverFlowDynamics v1.0: A Landlab component for computing two-dimensional river flow dynamics - Published in JOSS (2025)

spatpomp • Science 49%

R package for statistical inference of spatiotemporal partially observed Markov processes

Mozzie — Peer-reviewed • Science 98%

Mozzie: a computationally efficient simulator for the spatio-temporal modelling of mosquitoes - Published in JOSS (2025)

REMORA — Peer-reviewed • Science 93%

REMORA: Regional Modeling of Oceans Refined Adaptively (built on AMReX) - Published in JOSS (2025)

ICAT — Peer-reviewed • Science 96%

ICAT: The Interactive Corpus Analysis Tool - Published in JOSS (2025)

Giga Connectome — Peer-reviewed • Science 98%

Giga Connectome: a BIDS-app for time series and functional connectome extraction - Published in JOSS (2025)

AI-ANNE — Peer-reviewed • Science 93%

AI-ANNE: (A) (N)eural (N)et for (E)xploration - Published in JOSS (2025)

<code>diverse-seq</code> — Peer-reviewed • Science 93%

<code>diverse-seq</code>: an application for alignment-free selecting and clustering biological sequences - Published in JOSS (2025)

elfe3D v1.0.1 — Peer-reviewed • Science 93%

elfe3D v1.0.1: Modelling with the total electric field approach using finite elements in 3D - Published in JOSS (2025)

AquaCrop.jl — Peer-reviewed • Science 93%

AquaCrop.jl: A Process-Based Model of Crop Growth - Published in JOSS (2025)

SAnTex — Peer-reviewed • Science 93%

SAnTex: A Python-based Library for Seismic Anisotropy Calculation - Published in JOSS (2025)

midr • Science 49%

midr: Learning from Black-Box Models by Maximum Interpretation Decomposition

robincar2 • Science 49%

MDPSolver — Peer-reviewed • Science 93%

MDPSolver: An Efficient Solver for Markov Decision Processes - Published in JOSS (2025)

effectplots • Science 49%

Fast Effect Plots in R

EKF_CAL — Peer-reviewed • Science 98%

EKF_CAL: Extended Kalman Filter-based Calibration and Localization - Published in JOSS (2025)

corrp — Peer-reviewed • Science 93%

corrp: An R package for multiple correlation-like analysis and clustering in mixed data - Published in JOSS (2025)

popclass — Peer-reviewed • Science 100%

popclass: A Python Package for Classifying Microlensing Events - Published in JOSS (2025)

remotePARTS — Peer-reviewed • Science 93%

remotePARTS: Spatiotemporal autoregression analyses for large data sets - Published in JOSS (2025)

rbahadur • Science 49%

Efficient simulation of genotype / phenotype data under assortative mating using the Bahadur order-2 multivariate Bernoulli distribution

target-methylseq-qc — Peer-reviewed • Science 98%

target-methylseq-qc: a lightweight pipeline for collecting metrics from targeted sequence mapping files. - Published in JOSS (2025)

CUDA-METRO — Peer-reviewed • Science 93%

CUDA-METRO: Parallel Metropolis Monte Carlo for 2D Atomistic Spin Texture Simulation - Published in JOSS (2025)

ez-zarr — Peer-reviewed • Science 98%

ez-zarr: A Python package for easy access and visualisation of OME-Zarr filesets - Published in JOSS (2025)

pooledpeaks — Peer-reviewed • Science 93%

pooledpeaks: Open-Source Fragment Scoring and Analysis Workflow for Population Genetic Analyses of Microsatellite Markers in Pooled Samples - Published in JOSS (2025)

ParquetDB — Peer-reviewed • Science 93%

ParquetDB: A Lightweight Python Parquet-Based Database - Published in JOSS (2025)

AutoEIS — Peer-reviewed • Science 98%

AutoEIS: Automated equivalent circuit modeling from electrochemical impedance spectroscopy data using statistical machine learning - Published in JOSS (2025)

prepost • Science 49%

R package for analyzing interactions in survey experiments with priming or post-treatment bias

PathSim - A System Simulation Framework — Peer-reviewed • Science 98%

PathSim - A System Simulation Framework - Published in JOSS (2025)

BESMARTS — Peer-reviewed • Science 93%

BESMARTS: A toolkit for data-driven force field design using binary-encoded SMARTS - Published in JOSS (2025)

EXP — Peer-reviewed • Science 98%

EXP: a Python/C++ package for basis function expansion methods in galactic dynamics - Published in JOSS (2025)

Minterpy — Peer-reviewed • Science 93%

Minterpy: multivariate polynomial interpolation in Python - Published in JOSS (2025)

Topography-based surface water modeling in Julia, with support for infiltration and temporal developments — Peer-reviewed • Science 67%

Topography-based surface water modeling in Julia, with support for infiltration and temporal developments - Published in JOSS (2025)

DIFFICE-jax — Peer-reviewed • Science 93%

DIFFICE-jax: Differentiable neural-network solver for data assimilation of ice shelves in JAX - Published in JOSS (2025)

pengWann — Peer-reviewed • Science 98%

pengWann: Descriptors of chemical bonding from Wannier functions - Published in JOSS (2025)

Pydre — Peer-reviewed • Science 100%

Pydre: A Python package for driving simulation data reduction - Published in JOSS (2025)

ironseed • Science 49%

Improved Random Number Generator Seeding

OPTIMUS — Peer-reviewed • Science 93%

OPTIMUS: A Multidimensional Global Optimization Package - Published in JOSS (2025)

ReadmeReady — Peer-reviewed • Science 93%

ReadmeReady: Free and Customizable Code Documentation with LLMs - A Fine-Tuning Approach - Published in JOSS (2025)

ipd • Science 49%

R package to perform statistically valid and efficient inference with predicted data (IPD) using state-of-the-art methods.

kernscr • Science 49%

Kernel Machine Score Test for Pathway Analysis in the Presence of Semi-Competing Risks

rjaf — Peer-reviewed • Science 95%

rjaf: Regularized Joint Assignment Forest with Treatment Arm Clustering - Published in JOSS (2025)

exametrika • Science 49%

Exametrika package for R

tread • Science 67%

tread is an R package to extract data from Excel files generated by Tecan Infinite 200 Pro plate readers

LongMemory.jl — Peer-reviewed • Science 100%

LongMemory.jl: Generating, Estimating, and Forecasting Long Memory Models in Julia - Published in JOSS (2025)

fuji • Science 67%

FAIRsFAIR Research Data Object Assessment Service

ke-rcnn • Science 54%

KE-RCNN: unifying knowledge based reasoning into part-level attribute parsing (TCYB 2022)

https://github.com/evamart/trimal-meta • Science 13%

Trimal metadata for development of Software Management Wizard importer.

QuantumACES.jl — Peer-reviewed • Science 98%

QuantumACES.jl: design noise characterisation experiments for quantum computers - Published in JOSS (2025)

biglasso • Science 49%

biglasso: Extending Lasso Model Fitting to Big Data in R

https://github.com/jbrea/netsim • Science 13%

conception • Science 44%

POC for a modular and conceptualized web app.

algo-hw4 • Science 44%

CircSeqAlignTk • Science 49%

An R package for end-to-end analysis of RNA-seq data for circular genome

CPSM • Science 49%

Cancer Patient Survival Model (CPSM)Package

DemeterWatch — Peer-reviewed • Science 95%

DemeterWatch: A Java tool to detect Law of Demeter violations in Java collections - Published in JOSS (2025)

AlphaMissenseR • Science 49%

Accessing AlphaMissense Data Resources in R

hrvo • Science 54%

The Hybrid Reciprocal Velocity Obstacle (C++)

demo-selenium-typescript • Science 44%

Demo Selenium TypeScript

386-fedproto-federated-prototype-learning-across-heterogeneous-clients • Science 54%

191-learning-an-animatable-detailed-3d-face-model-from-in-the-wild-images • Science 54%

101-eg-nas-neural-architecture-search-with-fast-evolutionary-exploration • Science 44%

beam_truss_matlab • Science 52%

beam_truss

ncmanager-help • Science 44%

Documentation and help for the Neighborhood Council Management System.

@stdlib/random-array-triangular • Science 44%

Create an array containing pseudorandom numbers drawn from a triangular distribution.

stats-strided-smeanli • Science 57%

Calculate the arithmetic mean of a single-precision floating-point strided array using a one-pass trial mean algorithm.

thiniceproject • Science 44%

Front facing website

wtf.metio.reguloj:reguloj • Science 44%

Lightweight business rule engine

tech-trends-website • Science 44%

Multi-page HTML/CSS site on emerging technology trends

https://github.com/gssi/deprecation-metamodeling • Science 13%

COHESIVM — Peer-reviewed • Science 98%

COHESIVM: Combinatorial h+/e- Sample Investigation using Voltaic Measurements - Published in JOSS (2025)

api-cookbook • Science 54%

Cookbook that focuses on accessing and visualizing data from various geoscience related APIs. In the cookbook, we will show step by step tutorials on retrieving data from the public APIs, then creating an informational and visually appealing plots.

https://github.com/gssi/mikado-playground • Science 26%

Mikado playground backend + frontend

cloud-genomics • Science 67%

Introduction to Cloud Computing for Genomics

lc-marcedit • Science 44%

Library Carpentry: MarcEdit

ScatteringOptics.jl — Peer-reviewed • Science 95%

ScatteringOptics.jl: An Interstellar Scattering Framework in the Julia Programming Language - Published in JOSS (2025)

organization-genomics • Science 44%

Project Organization and Management for Genomics

workbench-docs • Science 44%

The Carpentries Workbench Documentation

lc-r • Science 44%

Introduction to R

https://github.com/gsrelight/gsrelight.github.io • Science 13%

RationalPolygons • Science 44%

jax-ml__jax.ebd90e06 • Science 44%