valh • Rank 8.7 • Science 62%

Interface between R and the OpenStreetMap-based routing service Valhalla

metage2metabo • Rank 11.7 • Science 59%

From annotated genomes to metabolic screening in large scale microbiotas

snpsea • Rank 3.7 • Science 67%

:bar_chart: Identify cell types and pathways affected by genetic risk loci.

publications • Rank 11.7 • Science 59%

Publications from Trail of Bits

pymt • Rank 8.7 • Science 62%

A Python toolkit for running and coupling Earth surface models

https://github.com/aspuru-guzik-group/qnode • Rank 3.7 • Science 67%

Quantum dynamics latent neural ode

most • Rank 3.7 • Science 67%

MOST – MATPOWER Optimal Scheduling Tool, for steady-state power systems scheduling problems.

covid-19_7-tage-inzidenz_in_deutschland • Rank 3.7 • Science 67%

Im Datensatz '7-Tage-Inzidenz von COVID-19 in Deutschland' werden die aktuellen 7-Tage-Inzidenzen der nach den Vorgaben des Infektionsschutzgesetzes - IfSG - an das RKI übermittelten COVID-19-Fälle veröffentlicht. Datengrundlage zur Berechnung der 7-Tage-Inzidenzen sind die an das RKI übermittelten COVID-19-Fälle. Eine detaillierte Dokumentation...

signac • Rank 8.7 • Science 62%

Manage large and heterogeneous data spaces on the file system.

shinyssd v1.0 — Peer-reviewed • Rank 3.7 • Science 67%

shinyssd v1.0: Species Sensitivity Distributions for Ecotoxicological Risk Assessment - Published in JOSS (2019)

torchtime • Rank 3.6 • Science 67%

Benchmark time series data sets for PyTorch

muscle3 • Rank 6.6 • Science 64%

The third major version of the MUltiScale Coupling Library and Environment

json_repair • Rank 26.6 • Science 44%

A python module to repair invalid JSON from LLMs

quantumcollocation.jl • Rank 6.6 • Science 64%

Quantum Optimal Control with Direct Collocation

dm_robotics_panda • Rank 3.6 • Science 67%

Panda model for dm_robotics

mrland • Rank 3.6 • Science 67%

carma • Rank 6.6 • Science 64%

Converters between Armadillo matrices (C++) and Numpy arrays using Pybind11

rl4co • Rank 16.6 • Science 54%

A PyTorch library for all things Reinforcement Learning (RL) for Combinatorial Optimization (CO)

luscale • Rank 3.6 • Science 67%

R package | Landuse Scaling Tools

https://github.com/cbg-ethz/v-pipe-scout • Rank 3.6 • Science 67%

Rapid Viral Variant Exploration and Detection - Interactive WebApp

70-years-of-machine-learning-in-geoscience-in-review • Rank 3.6 • Science 67%

Code to recreate the tutorial and figures in the book chapter.

plutus — Peer-reviewed • Rank 3.6 • Science 67%

plutus: An R package to calculate electricity investments and stranded assets from the Global Change Analysis Model (GCAM) - Published in JOSS (2021)

gnn-pressure-estimation • Rank 3.6 • Science 67%

DiTEC research

sicdb-meds • Rank 3.6 • Science 67%

The Salzburg Intensive Care database (SICdb) MEDS ETL.

DiffEqFlux • Rank 16.6 • Science 54%

Pre-built implicit layer architectures with O(1) backprop, GPUs, and stiff+non-stiff DE solvers, demonstrating scientific machine learning (SciML) and physics-informed machine learning methods

typst • Rank 16.6 • Science 54%

A new markup-based typesetting system that is powerful and easy to learn.

easyfsl • Rank 16.6 • Science 54%

Ready-to-use code and tutorial notebooks to boost your way into few-shot learning for image classification.

recrec • Rank 3.6 • Science 67%

Recommender for suggesting letter writers 👍

tesseract-ocr • Rank 16.5 • Science 54%

Tesseract Open Source OCR Engine (main repository)

yggdrasil-decision-forests • Rank 21.5 • Science 49%

A library to train, evaluate, interpret, and productionize decision forest models such as Random Forest and Gradient Boosted Decision Trees.

tardis • Rank 6.5 • Science 64%

Transparent Adaptive Resource Dynamic Integration System

DifferentialEquations • Rank 19.5 • Science 51%

Multi-language suite for high-performance solvers of differential equations and scientific machine learning (SciML) components. Ordinary differential equations (ODEs), stochastic differential equations (SDEs), delay differential equations (DDEs), differential-algebraic equations (DAEs), and more in Julia.

last-mile-routing-analyzer • Rank 3.5 • Science 67%

lmr-analyzer: A powerful toolkit to analyze the interaction between last mile operations and the street network design.

papillon-ndl • Rank 3.5 • Science 67%

Papillon Nuclear Data Library

recotox • Rank 3.5 • Science 67%

REcoTox is a semi-automated, interactive R workflow to process US EPA ECOTOX Knowledgebase entire database ASCII files

https://github.com/changliao1025/pyearth • Rank 11.5 • Science 59%

A leatherman alike Python package for Earth science

LSX • Rank 11.5 • Science 59%

Semi-supervised algorithm for document scaling

imageinwords • Rank 6.5 • Science 64%

Data release for the ImageInWords (IIW) paper.

corems • Rank 11.5 • Science 59%

CoreMS is a comprehensive mass spectrometry software framework

slidem-python • Rank 3.5 • Science 67%

Python package for the SliDEM project

thapbi-pict • Rank 11.5 • Science 59%

Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool

spdep • Rank 21.5 • Science 49%

Spatial Dependence: Weighting Schemes and Statistics

magpiesets • Rank 3.5 • Science 67%

R package | MAgPIE sets for R

deepsearch-toolkit • Rank 16.5 • Science 54%

Interact with the Deep Search platform for new knowledge explorations and discoveries

rliable • Rank 16.5 • Science 54%

[NeurIPS'21 Outstanding Paper] Library for reliable evaluation on RL and ML benchmarks, even with only a handful of seeds.

website2022 • Rank 6.4 • Science 64%

ICESat-2 Hackweek 2022 landing page and jupyter book

immuneml • Rank 13.4 • Science 57%

immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

priorsense • Rank 13.4 • Science 57%

priorsense: an R package for prior diagnostics and sensitivity

graphqler • Rank 6.4 • Science 64%

🔍A cutting edge context aware GraphQL API fuzzing tool!

adcc • Rank 11.4 • Science 59%

adcc: Seamlessly connect your program to ADC

Dagger • Rank 16.4 • Science 54%

A framework for out-of-core and parallel execution

d3graph • Rank 16.4 • Science 54%

Creation of interactive networks using d3 Javascript

kirsche • Rank 3.4 • Science 67%

:cherries: Kirsche, connecting your references.

cromp • Rank 3.4 • Science 67%

The official implementation of CROMP (Constrained Regression with Ordered and Margin-sensitive Parameters) along with experimental test pipeline

signalgp-lite • Rank 3.4 • Science 67%

tappy • Rank 3.4 • Science 67%

Command line script and Python package for tidal analysis - Tidal Analysis Program in PYthon

trained_yolo • Rank 6.4 • Science 64%

mrfeed • Rank 3.4 • Science 67%

prompt-engineering-guide • Rank 16.4 • Science 54%

🐙 Guides, papers, lecture, notebooks and resources for prompt engineering

ioos_code_lab • Rank 6.4 • Science 64%

Notebook demonstrations and examples

hmmtmb • Rank 11.3 • Science 59%

Fit hidden Markov models using Template Model Builder (TMB): flexible state-dependent distributions, transition probability structures, random effects, and smoothing splines.

openpathsampling • Rank 16.3 • Science 54%

An open source Python framework for transition interface and path sampling calculations.

pyafq • Rank 8.3 • Science 62%

Please visit our new location: https://github.com/tractometry/pyAFQ

aspect • Rank 11.3 • Science 59%

A parallel, extensible finite element code to simulate convection in both 2D and 3D models.

dxtbx • Rank 13.3 • Science 57%

Diffraction Experiment Toolbox

cavaanalytics • Rank 3.3 • Science 67%

CAVAanalytics is a comprehensive framework for climate data analysis, offering streamlined access to data, advanced processing and visualization capabilities. It is designed to support a wide range of climate research and user needs

retorch • Rank 3.3 • Science 67%

RETORCH: Resource-aware End-to-End Test Orchestration

sensorium • Rank 3.3 • Science 67%

NeurIPS | 1st place solution for Sensorium 2023 Competition

pdesy • Rank 3.3 • Science 67%

Python package of Discrete Time-Event Simulator (DES) for engineering project. It aims to be the fundamental high-level building block for doing practical, real world engineering project management by DES and project modeling.

tumoroscope-pymc • Rank 3.3 • Science 67%

Python package of the 'Tumoroscope' model implemented in PyMC.

pygrin • Rank 6.3 • Science 64%

A python module to ray trace through gradient index (GRIN) lenses.

https://github.com/sparks-baird/self-driving-lab-demo • Rank 11.3 • Science 59%

Software and instructions for setting up and running a self-driving lab (autonomous experimentation) demo using dimmable RGB LEDs, an 8-channel spectrophotometer, a microcontroller, and an adaptive design algorithm, as well as extensions to liquid- and solid-based color matching demos.

https://github.com/cvxgrp/diffcp • Rank 16.3 • Science 54%

Differentiation through cone programs

pymech • Rank 6.3 • Science 64%

A Python software suite for Nek5000 and SIMSON

PySPOD — Peer-reviewed • Rank 11.3 • Science 59%

PySPOD: A Python package for Spectral Proper Orthogonal Decomposition (SPOD) - Published in JOSS (2021)

numerical_methods_introduction • Rank 3.3 • Science 67%

A set of Jupyter Notebooks demonstrating various numerical methods in Python.

leaflet-providersesp • Rank 3.3 • Science 67%

An extension to Leaflet that contains configurations for various free WMS (Web Map Service) and WMTS (Web Map Tile Service) providers of Spain (IDErioja, PNOA, IGN base, Catastro, etc), from Spanish mapping agencies.

metagenomics-workshop • Rank 6.3 • Science 64%

Metagenomics Workshop Overview

imitation • Rank 19.3 • Science 51%

Clean PyTorch implementations of imitation and reward learning algorithms

pydarnio • Rank 11.3 • Science 59%

Python Library for read in SuperDARN data

liburing • Rank 16.3 • Science 54%

Library providing helpers for the Linux kernel io_uring support

ucall • Rank 16.3 • Science 54%

Web Serving and Remote Procedure Calls at 50x lower latency and 70x higher bandwidth than FastAPI, implementing JSON-RPC & REST over io_uring ☎️

ace • Rank 11.3 • Science 59%

Ai2 Climate Emulator

scFeatures • Rank 13.3 • Science 57%

multiscale_spatial_image • Rank 16.3 • Science 54%

Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.

scatterd • Rank 16.3 • Science 54%

Scatterd is a Python package for easy and fast creation of beautiful scatter plots.

@stdlib/math-base-special-cinv • Rank 3.3 • Science 67%

Compute the inverse of a complex number.

myfempy • Rank 3.3 • Science 67%

Myfempy is a python package based on finite element method to multiphysics analysis.

quantumaudio • Rank 3.3 • Science 67%

Tools, circuits, examples & applications of Quantum Representations of Audio in qubit systems

teeplot • Rank 3.3 • Science 67%

organize data visualization output, automatically picking meaningful names based on semantic plotting variables

structuralcoexistence • Rank 3.3 • Science 67%

Shiny app to explore structural approach to species coexistence

compoda • Rank 3.3 • Science 67%

Simplex space operations for compositional data implemented in Python.

shockhash • Rank 3.3 • Science 67%

Towards Optimal-Space Minimal Perfect Hashing Beyond Brute-Force

DiffEqNoiseProcess • Rank 16.3 • Science 54%

A library of noise processes for stochastic systems like stochastic differential equations (SDEs) and other systems that are present in scientific machine learning (SciML)

climaland.jl • Rank 13.2 • Science 57%

Clima's Land Model

BesselK • Rank 6.2 • Science 64%

An AD-compatible modified second-kind Bessel function.

https://github.com/arklumpus/treenode • Rank 11.2 • Science 59%

Read, write and manipulate phylogenetic trees

cdr-database • Rank 6.2 • Science 64%

reports on carbon removal projects and technologies

psyke • Rank 13.2 • Science 57%

PSyKE: a (Python) platform for symbolic knowledge extraction

alz-predict-roivsnonroi • Rank 3.2 • Science 67%

Deep learning pipeline for efficiently predict Alzheimer's Disease from ADNI & OASIS