https://github.com/chains-project/breaking-good • Rank 2.5 • Science 67%

make breaking updates look good 👗 https://arxiv.org/abs/2407.03880

https://github.com/alleninstitute/ace • Rank 2.5 • Science 67%

R Shiny app for comparison of annotations (e.g., cell type assignments)

covid-are-konsultationsinzidenz • Rank 2.5 • Science 67%

Im Datensatz "COVID-ARE-Konsultationsinzidenz" des Robert Koch-Instituts werden wöchentliche Inzidenzen von ambulanten Konsultationen mit akuter respiratorischer Erkrankung (ARE) und zusätzlicher COVID-19-Diagnose in Deutschland bereitgestellt. Über das syndromische Surveillance-Modul SEED-ARE werden aus Sentinelpraxen Daten von gesetzlich versi...

transfer_li • Rank 2.5 • Science 67%

Transfer Li ions from cathode to anode in MD simulations

gdx • Rank 2.5 • Science 67%

R package | readGDX package for R

https://github.com/alleninstitute/et_connectivity • Rank 2.5 • Science 67%

Code used to analyze the connectivity of ET neurons in MICrONs dataset

DoubleFloats • Rank 15.5 • Science 54%

math with more good bits

nose • Rank 5.5 • Science 64%

:nose: Automated schema design for NoSQL applications

pdf-annotation-extractor-alfred • Rank 5.5 • Science 64%

Alfred Workflow to extract annotations from PDF files.

elixirst • Rank 12.4 • Science 57%

Session Types in Elixir

ena-upload-cli • Rank 15.4 • Science 54%

ENA upload cli - script your Open Data upload to the European Nucleotide Archive

microdatasus • Rank 12.4 • Science 57%

Download de dados do DataSUS e pré-processamento no R.

rseng • Rank 5.4 • Science 64%

research software engineering taxonomy and criteria

pytplot • Rank 15.4 • Science 54%

A python version of the IDL tplot libraries

synthetic-gravity-waves • Rank 2.4 • Science 67%

Python package for generating synthetic gravity waves used in machine learning training

bicycling-infrastructure-classification • Rank 2.4 • Science 67%

Developing a bicycling infrastructure classification system for Greater Melbourne using OpenStreetMap

picaxe • Rank 2.4 • Science 67%

work with the Flickr API to upload images, sort images, generate MD image reference links etc

planarfibers • Rank 2.4 • Science 67%

Bauer, J. K., & Böhlke, T. (2022). On the dependence of orientation averaging mean field homogenization on planar fourth-order fiber orientation tensors. Mechanics of Materials, 104307.

rangeland • Rank 2.4 • Science 67%

Pipeline for remotely sensed imagery. The pipeline processes satellite imagery alongside auxiliary data in multiple steps to arrive at a set of trend files related to land-cover changes.

lgn-autoencoder • Rank 2.4 • Science 67%

Lorentz group equivariant autoencoders based on Lorentz Group Network

cb-platon • Rank 10.4 • Science 59%

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

globalmatch • Rank 5.4 • Science 64%

GlobalMatch: Registration of forest terrestrial point clouds by global matching of relative stem positions [ISPRS 2023]

scadnano • Rank 12.4 • Science 57%

Python scripting library for generating designs readable by scadnano.

BioCor • Rank 15.4 • Science 54%

Package to calculate functional similarity between genes https://biocor.llrs.dev

tweetynet • Rank 10.4 • Science 59%

Hybrid convolutional-recurrent neural networks for segmentation of birdsong and classification of elements

gromacswrapper • Rank 15.4 • Science 54%

GromacsWrapper wraps system calls to GROMACS tools into thin Python classes (GROMACS 4.6.5 - 2024 supported).

clawpack • Rank 15.4 • Science 54%

Package for solving hyperbolic systems of partial differential equations

metagenomics-shell • Rank 5.4 • Science 64%

Introduction to the Command Line for Metagenomics

awesome-green-software • Rank 10.3 • Science 59%

myokit • Rank 15.3 • Science 54%

Source code, issues, and discussions for Myokit: A tool for cardiac electrophysiology modelling and simulation

pv_ice • Rank 10.3 • Science 59%

An open-source tool to quantify Solar Photovoltaics (PV) Energy and Mass Flows in the Circular Economy, from a Reliability and Lifetime approach

evoks • Rank 7.3 • Science 62%

EVOKS (Editor for Vocabularies to Know Semantics)

pymeep • Rank 12.3 • Science 57%

free finite-difference time-domain (FDTD) software for electromagnetic simulations

nimbleEcology • Rank 10.3 • Science 59%

python-kraken-sdk • Rank 15.3 • Science 54%

Command-line tool and SDK to access the Kraken Crypto Asset Exchange API (Spot & Futures, REST and Websocket API)

mishkal • Rank 15.3 • Science 54%

Mishkal is an arabic text vocalization software

ustore • Rank 15.3 • Science 54%

Multi-Modal Database replacing MongoDB, Neo4J, and Elastic with 1 faster ACID solution, with NetworkX and Pandas interfaces, and bindings for C 99, C++ 17, Python 3, Java, GoLang 🗄️

verilator • Rank 15.3 • Science 54%

Verilator open-source SystemVerilog simulator and lint system

cellranger • Rank 23.3 • Science 46%

Helper functions to work with spreadsheets and the "A1:D10" style of cell range specification

hn2016_falwa • Rank 10.3 • Science 59%

Python library for computing Finite-Amplitude Local Wave Activity Diagnostics from climate data.

rrlfe • Rank 2.3 • Science 67%

sslh • Rank 2.3 • Science 67%

Deep Semi-Supervised Learning with Holistic methods for audio classification.

afxdp_perfeval • Rank 2.3 • Science 67%

Performance Evaluation of AF_XDP Communication Patterns. Artifacts for "Are Kernel Drivers Ready For Accelerated Packet Processing Using AF_XDP?" paper published in IEEE NFV-SDN 2023

nback • Rank 2.3 • Science 67%

This repository contains an n-back task for MATLAB using Psychtoolbox 3 (PTB-3).

textgrid-tools • Rank 2.3 • Science 67%

Command-line interface which provides methods to modify TextGrids (.TextGrid) and their corresponding audio files (.wav).

respirometr • Rank 2.3 • Science 67%

R Package for Analysing Respirometry Data

pypect2s • Rank 2.3 • Science 67%

A GUI built to provide a contained base for the automation of the CT2S pipeline. With specific focus on paediatric applications. Utilising ANSYS and other FEM solver tools.

circulation.jl • Rank 2.3 • Science 67%

Tools for computing velocity circulation statistics from periodic 3D Navier-Stokes and Gross-Pitaevskii fields

nbody2d • Rank 2.3 • Science 67%

2D PM n-body code for cosmology

bizket • Rank 2.3 • Science 67%

demes • Rank 15.3 • Science 54%

Tools for describing and manipulating demographic models.

fastapi-cli • Rank 25.3 • Science 44%

Run and manage FastAPI apps from the command line with FastAPI CLI. 🚀

fealpy • Rank 15.3 • Science 54%

Finite Element Analysis Library in Python

taxotools • Rank 10.3 • Science 59%

Tools to Handle Taxonomic Lists

radar-cookbook • Rank 5.3 • Science 64%

A cookbook meant to work with various weather radar data

adl-benchmarks-index • Rank 5.3 • Science 64%

A list of example analysis challenges and solved implementations of them in various languages

fer • Rank 18.3 • Science 51%

Facial Expression Recognition with a deep neural network as a PyPI package

SpaceLiDAR • Rank 5.3 • Science 64%

A Julia package for working with ICESat-2 & GEDI data as part of my PhD research

bmusegan • Rank 5.2 • Science 64%

Code for “Convolutional Generative Adversarial Networks with Binary Neurons for Polyphonic Music Generation”

cbsyst • Rank 10.2 • Science 59%

Python module for calculating carbon and boron solution chemistry.

MuladdMacro • Rank 15.2 • Science 54%

This package contains a macro for converting expressions to use muladd calls and fused-multiply-add (FMA) operations for high-performance in the SciML scientific machine learning ecosystem

ckanext-video • Rank 7.2 • Science 62%

A CKAN extension for embedding Youtube or Vimeo videos as views.

semEff • Rank 12.2 • Science 57%

Automatic Calculation of Effects for Piecewise Structural Equation Models

python-tooling • Rank 7.2 • Science 62%

Python package template for new research software projects

rdmo • Rank 15.2 • Science 54%

A tool to support the planning, implementation, and organization of research data management.

parallel-hashmap • Rank 15.2 • Science 54%

A family of header-only, very fast and memory-friendly hashmap and btree containers.

ball • Rank 10.2 • Science 59%

Statistical Inference and Sure Independence Screening via Ball Statistics

jupyter4nfdi_survey_results • Rank 2.2 • Science 67%

A Jupyter Notebook to showcase and explore the results of the Jupyter4NFDI user survey

samapp2024.jl • Rank 2.2 • Science 67%

Code for the SAM-I riboswitch paper

herbie-without-docs • Rank 2.2 • Science 67%

A repository of Herbie without rendered documentation, just for demonstration purposes

cindy • Rank 2.2 • Science 67%

CINDy: Conditional gradient-based Identification of Non-linear Dynamics – Noise-robust recovery

multi-mode-cnn-pytorch • Rank 2.2 • Science 67%

A PyTorch implementation of the Multi-Mode CNN to reconstruct Chlorophyll-a time series in the global ocean from oceanic and atmospheric physical drivers

nextits • Rank 2.2 • Science 67%

A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio

pytesmo • Rank 15.2 • Science 54%

python Toolbox for the Evaluation of Soil Moisture Observations

phenobench • Rank 7.2 • Science 62%

PhenoBench Development Kit

@stdlib/blas-ext-base-gcusumkbn2 • Rank 12.2 • Science 57%

Calculate the cumulative sum of strided array elements using a second-order iterative Kahan–Babuška algorithm.

ApproxFun • Rank 15.2 • Science 54%

Julia package for function approximation

lls-core • Rank 12.2 • Science 57%

Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.

silero-vad • Rank 25.2 • Science 44%

Silero VAD: pre-trained enterprise-grade Voice Activity Detector

pyfabm • Rank 10.2 • Science 59%

The Framework for Aquatic Biogeochemical Models (FABM): a Fortran 2003 programming framework for biogeochemical models of marine and freshwater systems.

qecp • Rank 15.1 • Science 54%

An educational tool to the introduction of Quantum Error Correction (QEC)

envo • Rank 10.1 • Science 59%

A community-driven ontology for the representation of environments

westpa • Rank 15.1 • Science 54%

WESTPA: The Weighted Ensemble Simulation Toolkit with Parallelization and Analysis

zol • Rank 7.1 • Science 62%

zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

amr-wind • Rank 10.1 • Science 59%

AMReX-based structured wind solver

tidysdm • Rank 12.1 • Science 57%

R package to fit species distribution models (SDMs) using the 'tidymodels' framework

jupyterquiz • Rank 15.1 • Science 54%

An interactive Quiz generator for Jupyter notebooks and Jupyter Book

triton • Rank 7.1 • Science 62%

:whale: Scripps Whale Acoustics Lab :earth_americas: Scripps Acoustic Ecology Lab - Triton with remoras in development

torch-hd • Rank 15.1 • Science 54%

Torchhd is a Python library for Hyperdimensional Computing and Vector Symbolic Architectures

beezdemand • Rank 10.1 • Science 59%

Behavioral Economic Easy Demand

HOODESolver.jl — Peer-reviewed • Rank 5.1 • Science 64%

HOODESolver.jl: A Julia package for highly oscillatory problems - Published in JOSS (2021)

mrdownscale • Rank 2.1 • Science 67%

udf-bioutils • Rank 2.1 • Science 67%

Bioinformatics related user-defined functions for Cloudera Impala.

mtp-db • Rank 2.1 • Science 67%

The Membrane Transport Protein Database

gis-python-power • Rank 2.1 • Science 67%

Demonstration of the power of Python for GIS and Geosciences.

complexdiff.jl • Rank 2.1 • Science 67%

"I can't believe it's not real!"

wgan-supported-augmentation • Rank 2.1 • Science 67%

Morphological Classification of Radio Galaxies with wGAN-supported Augmentation

mrsoil • Rank 2.1 • Science 67%

Package contains soil organic carbon cycling model based on IPCC Guidelines 2019 for data prepared in the madrat universe.

atavide • Rank 2.1 • Science 67%

Atavistic processing of metagenomics data.

node-pathogens-portal • Rank 2.1 • Science 67%

This toolbox contains minimal code for a Pathogens Portal Node (PPN). You can view a demo site at the URL below