fair-dash • Rank 3.2 • Science 67%

A simple static site generator for getting repo statistics.

dea_seurat • Rank 3.2 • Science 67%

A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.

humolire • Rank 3.2 • Science 67%

HuMoLiRe is a Pedestrian Dead-Reckoning Particle Filter Map-aided system that leverages human motion likelihood in indoor spaces to estimate their position. This repository is the dataset and software published with its paper.

hail • Rank 24.2 • Science 46%

Cloud-native genomic dataframes and batch computing

monet • Rank 8.2 • Science 62%

The Model and ObservatioN Evaluation Toolkit (MONET)

pysyft • Rank 24.2 • Science 46%

Perform data science on data that remains in someone else's server

Convex • Rank 16.2 • Science 54%

A Julia package for disciplined convex programming

pmdarima • Rank 26.2 • Science 44%

A statistical library designed to fill the void in Python's time series analysis capabilities, including the equivalent of R's auto.arima function.

rainette • Rank 11.2 • Science 59%

R implementation of the Reinert text clustering method

https://github.com/kevinshen56714/emc-pypi • Rank 11.2 • Science 59%

Python interface for Enhanced Monte Carlo (EMC)

ceresfit • Rank 3.2 • Science 67%

Linear Regression for data set with correlated or uncorrelated uncertainties in both axes.

https://github.com/cda-tum/mnt-bench • Rank 3.2 • Science 67%

MNT Bench - An MNT tool for Benchmarking FCN circuits

enhancing_reaxff • Rank 3.2 • Science 67%

Jupyter notebooks used for retraining the ReaxFF force field for the inorganic compound LiF.

g-tomo • Rank 3.2 • Science 67%

G-Tomo (Galactic Tomography) app for exploitation of 3d dust extinction in the local galaxy. Extraction of 1d profiles and 2d maps (slices)

bikenwgaps • Rank 3.2 • Science 67%

Automated detection of gaps in bicycle networks: source code for IPDC procedure

nextjstemplate • Rank 3.2 • Science 67%

Biodesign Digital Health NextJS Template

Emporium • Rank 3.2 • Science 67%

This package provides a selection of useful "scripts" for the project maintainer. Useful for automated changes to large collections of packages.

https://github.com/biocore/qurro • Rank 11.2 • Science 59%

Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples

nexmon • Rank 11.2 • Science 59%

The C-based Firmware Patching Framework for Broadcom/Cypress WiFi Chips that enables Monitor Mode, Frame Injection and much more

nmma • Rank 11.2 • Science 59%

A pythonic library for probing nuclear physics and cosmology with multimessenger analysis

nab • Rank 11.2 • Science 59%

The Numenta Anomaly Benchmark

sigfig • Rank 16.1 • Science 54%

This is the sigfig Python package used for rounding numbers (with expected results)

openstef • Rank 16.1 • Science 54%

Automated Machine Learning pipelines. Builds the Open Short Term Energy Forecasting package.

ExaAdmm • Rank 6.1 • Science 64%

Julia implementation of ADMM solver on multiple GPUs

soniscope-jupyter • Rank 5.1 • Science 65%

jupyter notebook widget with a scatter plot and an interactive lens to enable interactive sonification

rogue • Rank 11.1 • Science 59%

Identify rogue taxa in phylogenetic trees within R

mapSpain • Rank 13.1 • Science 57%

R package with the administrative boundaries of Spain, including CCAA, provinces and municipalities

alpaka • Rank 11.1 • Science 59%

Abstraction Library for Parallel Kernel Acceleration :llama:

geos-chem • Rank 11.1 • Science 59%

GEOS-Chem "Science Codebase" repository. Contains GEOS-Chem science routines, run directory generation scripts, and interface code. This repository is used as a submodule within the GCClassic and GCHP wrappers, as well as in other modeling contexts (external ESMs).

stplanr • Rank 21.1 • Science 49%

Sustainable transport planning with R

impact • Rank 3.1 • Science 67%

IMPaCT: Interval MDP Parallel Construction for Controller Synthesis of Large-Scale Stochastic Systems. IMPaCT is an open-source software tool for the parallelized verification and controller synthesis of large-scale stochastic systems using interval Markov chains (IMCs) and interval Markov decision processes (IMDPs).

https://github.com/SciML/Optimization.jl • Rank 11.1 • Science 59%

Mathematical Optimization in Julia. Local, global, gradient-based and derivative-free. Linear, Quadratic, Convex, Mixed-Integer, and Nonlinear Optimization in one simple, fast, and differentiable interface.

mmhuman3d • Rank 16.1 • Science 54%

OpenMMLab 3D Human Parametric Model Toolbox and Benchmark

netplotbrain • Rank 11.1 • Science 59%

A package to create simple 3D network visualizations on a brain.

ckanext-statistics • Rank 8.1 • Science 62%

A CKAN extension for accessing download statistics

ckanext-list • Rank 8.1 • Science 62%

A CKAN extension that adds a list view for resources.

distance-estimation • Rank 3.0 • Science 67%

Distance Estimation for Estimating Animal Abundance

qualle • Rank 3.0 • Science 67%

Implementation of Qualle Framework as proposed in the paper "Content-Based Quality Estimation for Automatic Subject Indexing of Short Texts under Precision and Recall Constraints" and accompanying source code by Martin Toepfer and Christin Seifert.

sygma • Rank 3.0 • Science 67%

A python library for prediction of drug metabolites

com.github.spinalhdl:spinalhdl-all_2.11 • Rank 16.0 • Science 54%

Scala based HDL

NN-SVG — Peer-reviewed • Rank 11.0 • Science 59%

NN-SVG: Publication-Ready Neural Network Architecture Schematics - Published in JOSS (2019)

dendextend • Rank 21.0 • Science 49%

Extending R's Dendrogram Functionality

JuliaCall — Peer-reviewed • Rank 21.0 • Science 49%

JuliaCall: an R package for seamless integration between R and Julia - Published in JOSS (2019)

deepcell • Rank 16.0 • Science 54%

Deep Learning Library for Single Cell Analysis

tf-keras-vis • Rank 16.0 • Science 54%

Neural network visualization toolkit for tf.keras

casile • Rank 16.0 • Science 54%

The CaSILE toolkit, a book publishing workflow employing SILE and other wizardry.

rsparse • Rank 13.0 • Science 57%

A Rust library for solving sparse linear systems using direct methods.

croptimizr • Rank 6.0 • Science 64%

Estimate Crop Models' parameters

praat-parselmouth • Rank 21.0 • Science 49%

Praat in Python, the Pythonic way

paper_viceconte_2021_ral_adherent • Rank 3.0 • Science 67%

benchmarks-acoustic-propagation • Rank 3.0 • Science 67%

Coupled model development for acoustic propagation through multilayer systems for particle-velocity sensors

goodness-of-pronunciation-pipelines-for-oov-problem • Rank 3.0 • Science 67%

Goodness of Pronunciation Pipelines for OOV Removal

vor_cerebellum • Rank 3.0 • Science 67%

Cerebellum learning to perform the VOR.

radius_clustering • Rank 3.0 • Science 67%

Source code repository of the Radius clustering python package.

caltechthesis • Rank 3.0 • Science 67%

A test version of CaltechTHESIS on InvenioRDM

AtiyahBott • Rank 3.0 • Science 67%

An implementation of the Atiyah-Bott formula for the moduli space of genus 0 stable maps.

moana-qc • Rank 3.0 • Science 67%

torsiondrive • Rank 6.0 • Science 64%

Dihedral scanner with wavefront propagation

nlesc-flamingo • Rank 6.0 • Science 64%

Computation and filtering of molecular properties

hyper2 • Rank 16.0 • Science 54%

org.webjars.npm:nearley • Rank 13.0 • Science 57%

📜🔜🌲 Simple, fast, powerful parser toolkit for JavaScript.

https://github.com/broadinstitute/tangram • Rank 16.0 • Science 54%

Spatial alignment of single cell transcriptomic data.

ckanext-iiif • Rank 8.0 • Science 62%

CKAN IIIF extension

mlfit • Rank 11.0 • Science 59%

Implementation of algorithms that extend IPF to nested structures

golem • Rank 6.0 • Science 64%

GOLEM is a numerical simulator for modelling coupled Thermo-Hydro-Mechanical processes in faulted geothermal reservoirs.

ctlearn • Rank 11.0 • Science 59%

Deep Learning for IACT Event Reconstruction

btlemap • Rank 5.9 • Science 64%

Nmap for Bluetooth Low Energy

sichash • Rank 2.9 • Science 67%

A (Minimal) Perfect Hash Function based on irregular cuckoo hashing, retrieval, and overloading.

rockyml • Rank 2.9 • Science 67%

⛰️ RockyML - A High-Performance Scientific Computing Framework for Non-smooth Machine Learning Problems

ieee118_power_flow_data • Rank 2.9 • Science 67%

Data pipeline to build power flow cases of IEEE-118 power system

choclo • Rank 12.9 • Science 57%

Kernel functions for your geophysical models

leaflet-velocity • Rank 17.9 • Science 52%

Visualise velocity data on a leaflet layer

lsstdesc-weaklensingdeblending • Rank 5.9 • Science 64%

Weak lensing fast simulations and analysis of blended objects.

eduos-rs • Rank 7.9 • Science 62%

A teaching operating system written in Rust

foliage • Rank 7.9 • Science 62%

Foliage is the FOLIo chAnGe Editor, a tool to do bulk changes in FOLIO using the network API.

cosipy • Rank 10.9 • Science 59%

Coupled snowpack and ice surface energy and mass balance model in Python

DataDeps • Rank 15.9 • Science 54%

reproducible data setup for reproducible science

atmorep • Rank 5.9 • Science 64%

AtmoRep model code

tethys-platform • Rank 15.9 • Science 54%

The Tethys Platform main Django website project repository.

torchdynamo • Rank 15.9 • Science 54%

A Python-level JIT compiler designed to make unmodified PyTorch programs faster.

df3d • Rank 12.9 • Science 57%

Motion capture (markerless 3D pose estimation) pipeline and helper GUI for tethered Drosophila.

raer • Rank 12.9 • Science 57%

Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments

blueprints • Rank 5.9 • Science 64%

Software development blueprints for epiverse-trace

enhancing_reaxff_dft_database • Rank 2.9 • Science 67%

Database used for retraining the ReaxFF force field for the inorganic compound LiF.

mips • Rank 2.9 • Science 67%

MIPS – MATPOWER Interior Point Solver for nonlinear optimization problems.

radseq • Rank 2.9 • Science 67%

Variant-calling pipeline for Restriction site-associated DNA sequencing (RADseq).

cato • Rank 2.9 • Science 67%

Automatic source transformation to apply HPC frameworks with minimal user interaction

portfoliochoiceblogpost • Rank 2.9 • Science 67%

Enlsip.jl — Peer-reviewed • Rank 2.9 • Science 67%

Enlsip.jl: A Julia optimization package to solve constrained nonlinear least-squares problems - Published in JOSS (2024)

NarmViz • Rank 2.9 • Science 67%

Visualize time series numerical association rules

https://github.com/insarlab/mintpy • Rank 10.9 • Science 59%

Miami InSAR time-series software in Python

archaeophases • Rank 10.9 • Science 59%

Post-processing MCMC Simulations for Chronological Modelling

https://github.com/bin-cao/bgolearn • Rank 10.9 • Science 59%

[Materials & Design 2024 | NPJ com mat 2024] Offical implement of Bgolearn

monetio • Rank 7.9 • Science 62%

The Model and ObservatioN Evaluation Tool I/O package

davos • Rank 5.9 • Science 64%

Import packages in Python, even if they aren't installed!

api_nodetest • Rank 5.9 • Science 64%

node.js and express implementation for the Neotoma API

saintbioutils • Rank 5.9 • Science 64%

Repository of utility and miscellaneous functions for using in bioinformatics pipelines, primarily in Python

tooth-detection-and-numbering • Rank 5.8 • Science 64%

T.C. Maltepe University Graduate Project (Tooth Detection and Numbering From Panoramic Radiography Adult Patients Using Artificial Neural Network)

tximport • Rank 20.8 • Science 49%

Transcript quantification import for modular pipelines

matlab-novice • Rank 7.8 • Science 62%

Programming with MATLAB