Updated 10 months ago

segul • Rank 15.8 • Science 67%

An ultrafast and memory efficient tool for phylogenomics

Updated 10 months ago

nanoseq • Rank 8.8 • Science 67%

Nanopore demultiplexing, QC and alignment pipeline

Updated 10 months ago

filtersam • Rank 6.3 • Science 67%

Tools to filter SAM/BAM files by percent identity and percent of matched sequence

Updated 10 months ago

ska • Rank 15.4 • Science 44%

Split k-mer analysis – version 2

Updated 10 months ago

pypar • Rank 12.4 • Science 44%

Phoneme alignment representation compatible with multiple forced aligners

Updated 10 months ago

align-cli • Rank 11.9 • Science 44%

A CLI for pairwise alignment of sequences, using both normal and mass based alignment.

Updated 10 months ago

pyfoal • Rank 10.7 • Science 44%

Python forced alignment

Updated 10 months ago

astred • Rank 3.2 • Science 41%

An easy-to-use library to linguistically compare one sentence and its words to another, in the same language or a different one. For instance useful for comparing a translation with the original text, to find differences and similarities between two different translations, or to see how a machine translation differs from a reference translation.

Updated 10 months ago

microaligner • Science 44%

Image registration (alignment) software for large microscopy images

Updated 10 months ago

pacvar • Science 57%

Longread PacBio sequencing processing for WGS and PureTarget

Updated 10 months ago

variantcalling • Science 65%

Nextflow DSL2 pipeline to call variants on long read alignment.

Updated 10 months ago

awesome-rlaif • Science 54%

A continually updated list of literature on Reinforcement Learning from AI Feedback (RLAIF)

Updated 10 months ago

relationship-between-auditory-and-semantic-entrainment • Science 44%

Relationship between auditory and semantic entrainmnet

Updated 10 months ago

tomobear • Science 67%

TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram averaging.

Updated 10 months ago

mapsea • Science 57%

Mapping And Prediction of Shared Elements in Alignments

Updated 10 months ago

cath-tools • Science 28%

Protein structure comparison tools such as SSAP and SNAP

Updated 10 months ago

evolution-by-emergence • Science 67%

LaTeX source of the open‑access book “Evolution by Emergence” on networks, complexity & universal evolution (CC‑BY).

Updated 10 months ago

bamtocov • Science 67%

🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

Updated 10 months ago

nf-fastq2bam • Science 57%

Nextflow pipeline to convert FASTQ files to BAM for WGS and RNA-seq data

Updated 10 months ago

goombay • Science 67%

Python implementation of several sequence alignment algorithms such as Waterman-Smith-Beyer, Gotoh, and Needleman-Wunsch intended to calculate distance, show alignment, and display the underlying matrices.

Updated 10 months ago

dpo-rlhf-paraphrase-types • Science 67%

Enhancing paraphrase-type generation using Direct Preference Optimization (DPO) and Reinforcement Learning from Human Feedback (RLHF), with large-scale HPC support. This project aligns model outputs to human-ranked data for robust, safety-focused NLP.

Updated 10 months ago

symbolic-governed-mistral-artifact • Science 44%

Tier-10 sealed governance artifact for Mistral-7B with exact-match benchmarks and symbolic verifier.

Updated 10 months ago

amino_align • Science 18%

Python code for bioinformatics about proteins

Updated 10 months ago

subaligner • Science 67%

Automatically synchronize and translate subtitles, or create new ones by transcribing, using pre-trained DNNs, Forced Alignments and Transformers. https://subaligner.readthedocs.io/