filtersam
Tools to filter SAM/BAM files by percent identity and percent of matched sequence
align-cli
A CLI for pairwise alignment of sequences, using both normal and mass based alignment.
astred
An easy-to-use library to linguistically compare one sentence and its words to another, in the same language or a different one. For instance useful for comparing a translation with the original text, to find differences and similarities between two different translations, or to see how a machine translation differs from a reference translation.
microaligner
Image registration (alignment) software for large microscopy images
variantcalling
Nextflow DSL2 pipeline to call variants on long read alignment.
relationship-between-auditory-and-semantic-entrainment
Relationship between auditory and semantic entrainmnet
tomobear
TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram averaging.
evolution-by-emergence
LaTeX source of the open‑access book “Evolution by Emergence” on networks, complexity & universal evolution (CC‑BY).
nf-fastq2bam
Nextflow pipeline to convert FASTQ files to BAM for WGS and RNA-seq data
goombay
Python implementation of several sequence alignment algorithms such as Waterman-Smith-Beyer, Gotoh, and Needleman-Wunsch intended to calculate distance, show alignment, and display the underlying matrices.
dpo-rlhf-paraphrase-types
Enhancing paraphrase-type generation using Direct Preference Optimization (DPO) and Reinforcement Learning from Human Feedback (RLHF), with large-scale HPC support. This project aligns model outputs to human-ranked data for robust, safety-focused NLP.
symbolic-governed-mistral-artifact
Tier-10 sealed governance artifact for Mistral-7B with exact-match benchmarks and symbolic verifier.
bioinformatics-toolbox
Docker container for bioinformatics tools and pipelines
subaligner
Automatically synchronize and translate subtitles, or create new ones by transcribing, using pre-trained DNNs, Forced Alignments and Transformers. https://subaligner.readthedocs.io/