PlatiPy
PlatiPy: Processing Library and Analysis Toolkit for Medical Imaging in Python - Published in JOSS (2023)
small_gicp
small_gicp: Efficient and parallel algorithms for point cloud registration - Published in JOSS (2024)
BrainGlobe Atlas API
BrainGlobe Atlas API: a common interface for neuroanatomical atlases - Published in JOSS (2020)
mcmicro
An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
globalmatch
GlobalMatch: Registration of forest terrestrial point clouds by global matching of relative stem positions [ISPRS 2023]
https://github.com/brainglobe/brainreg-napari
Automated 3D brain registration in napari with support for multiple species and atlases.
slicer
Multi-platform, free open source software for visualization and image computing.
microaligner
Image registration (alignment) software for large microscopy images
craniumpy
A tool for the alignment and basic analysis of 3D meshes, focused on craniofacial applications.
pituitary-segmentation-tool
This repository contains code that normalizes head MRIs segments the pituitary gland.