Scientific Software
Updated 4 months ago

PlatiPy — Peer-reviewed • Rank 15.1 • Science 100%

PlatiPy: Processing Library and Analysis Toolkit for Medical Imaging in Python - Published in JOSS (2023)

Computer Science Artificial Intelligence and Machine Learning
Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

small_gicp — Peer-reviewed • Rank 17.0 • Science 98%

small_gicp: Efficient and parallel algorithms for point cloud registration - Published in JOSS (2024)

Earth and Environmental Sciences (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

BrainGlobe Atlas API — Peer-reviewed • Rank 18.2 • Science 77%

BrainGlobe Atlas API: a common interface for neuroanatomical atlases - Published in JOSS (2020)

Scientific Software · Peer-reviewed
Updated 4 months ago

mcmicro • Rank 5.6 • Science 67%

An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.

Updated 4 months ago

globalmatch • Rank 5.4 • Science 64%

GlobalMatch: Registration of forest terrestrial point clouds by global matching of relative stem positions [ISPRS 2023]

Updated 4 months ago

https://github.com/brainglobe/brainreg-napari • Rank 9.1 • Science 51%

Automated 3D brain registration in napari with support for multiple species and atlases.

Updated 4 months ago

microaligner • Science 44%

Image registration (alignment) software for large microscopy images

Updated 4 months ago

craniumpy • Science 67%

A tool for the alignment and basic analysis of 3D meshes, focused on craniofacial applications.

Updated 4 months ago

pituitary-segmentation-tool • Science 44%

This repository contains code that normalizes head MRIs segments the pituitary gland.