Scientific Software
Updated 9 months ago

Intracranial Electrode Location and Analysis in MNE-Python — Peer-reviewed • Rank 26.8 • Science 100%

Intracranial Electrode Location and Analysis in MNE-Python - Published in JOSS (2022)

Scientific Software
Updated 9 months ago

Flux — Peer-reviewed • Rank 21.9 • Science 100%

Flux: Elegant machine learning with Julia - Published in JOSS (2018)

Scientific Software
Updated 9 months ago

imodels — Peer-reviewed • Rank 21.0 • Science 100%

imodels: a python package for fitting interpretable models - Published in JOSS (2021)

Scientific Software
Updated 9 months ago

sbi reloaded — Peer-reviewed • Rank 20.0 • Science 100%

sbi reloaded: a toolkit for simulation-based inference workflows - Published in JOSS (2025)

Scientific Software
Updated 9 months ago

samgeo — Peer-reviewed • Rank 19.9 • Science 100%

samgeo: A Python package for segmenting geospatial data with the Segment Anything Model (SAM) - Published in JOSS (2023)

Earth and Environmental Sciences
Scientific Software · Peer-reviewed
Scientific Software
Updated 9 months ago

TorchGAN — Peer-reviewed • Rank 18.9 • Science 100%

TorchGAN: A Flexible Framework for GAN Training and Evaluation - Published in JOSS (2021)

Scientific Software
Updated 9 months ago

gmr — Peer-reviewed • Rank 18.2 • Science 100%

gmr: Gaussian Mixture Regression - Published in JOSS (2021)

Engineering (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 9 months ago

Verde — Peer-reviewed • Rank 18.0 • Science 100%

Verde: Processing and gridding spatial data using Green’s functions - Published in JOSS (2018)

Scientific Software
Updated 9 months ago

Machine Learning Validation via Rational Dataset Sampling with astartes — Peer-reviewed • Rank 15.6 • Science 100%

Machine Learning Validation via Rational Dataset Sampling with astartes - Published in JOSS (2023)

Engineering (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 9 months ago

torchquad — Peer-reviewed • Rank 14.3 • Science 100%

torchquad: Numerical Integration in Arbitrary Dimensions with PyTorch - Published in JOSS (2021)

Scientific Software
Updated 9 months ago

DeepRiver — Peer-reviewed • Rank 12.6 • Science 100%

DeepRiver: A Deep Learning Library for Data Streams - Published in JOSS (2025)

Scientific Software
Updated 9 months ago

tpcp — Peer-reviewed • Rank 12.9 • Science 98%

tpcp: Tiny Pipelines for Complex Problems - A set of framework independent helpers for algorithms development and evaluation - Published in JOSS (2023)

Mathematics (37%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 9 months ago

f3dasm — Peer-reviewed • Rank 12.7 • Science 98%

f3dasm: Framework for Data-Driven Design and Analysis of Structures and Materials - Published in JOSS (2024)

Earth and Environmental Sciences
Scientific Software · Peer-reviewed
Scientific Software
Updated 9 months ago

InvertibleNetworks.jl — Peer-reviewed • Rank 10.6 • Science 100%

InvertibleNetworks.jl: A Julia package for scalable normalizing flows - Published in JOSS (2024)

Scientific Software
Updated 9 months ago

VeridicalFlow — Peer-reviewed • Rank 10.4 • Science 100%

VeridicalFlow: a Python package for building trustworthy data science pipelines with PCS - Published in JOSS (2022)

Scientific Software
Updated 9 months ago

timeseriesflattener — Peer-reviewed • Rank 11.2 • Science 98%

timeseriesflattener: A Python package for summarizing features from (medical) time series - Published in JOSS (2023)

Scientific Software
Updated 9 months ago

PyVBMC — Peer-reviewed • Rank 11.1 • Science 98%

PyVBMC: Efficient Bayesian inference in Python - Published in JOSS (2023)

Scientific Software
Updated 9 months ago

BayesO — Peer-reviewed • Rank 10.8 • Science 98%

BayesO: A Bayesian optimization framework in Python - Published in JOSS (2023)

Artificial Intelligence and Machine Learning (31%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 9 months ago

PyBCI — Peer-reviewed • Rank 8.7 • Science 100%

PyBCI: A Python Package for Brain-Computer Interface (BCI) Design - Published in JOSS (2023)

Scientific Software
Updated 9 months ago

MapReader — Peer-reviewed • Rank 8.2 • Science 100%

MapReader: Open software for the visual analysis of maps - Published in JOSS (2024)

Political Science Earth and Environmental Sciences
Scientific Software · Peer-reviewed
Scientific Software
Updated 9 months ago

FTorch — Peer-reviewed • Rank 8.0 • Science 100%

FTorch: a library for coupling PyTorch models to Fortran - Published in JOSS (2025)

Agricultural and Biological Sciences (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 9 months ago

TorchMetrics - Measuring Reproducibility in PyTorch — Peer-reviewed • Rank 30.8 • Science 77%

TorchMetrics - Measuring Reproducibility in PyTorch - Published in JOSS (2022)

Mathematics
Scientific Software · Peer-reviewed
Scientific Software
Updated 9 months ago

AddaxAI — Peer-reviewed • Rank 7.5 • Science 100%

AddaxAI: A no-code platform to train and deploy custom YOLOv5 object detection models - Published in JOSS (2023)

Scientific Software
Updated 9 months ago

GNS — Peer-reviewed • Rank 7.3 • Science 100%

GNS: A generalizable Graph Neural Network-based simulator for particulate and fluid modeling - Published in JOSS (2023)

Biology (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 9 months ago

ChainoPy — Peer-reviewed • Rank 8.9 • Science 98%

ChainoPy: A Python Library for Discrete Time Markov Chain Based Stochastic Analysis - Published in JOSS (2024)

Scientific Software
Updated 9 months ago

SIRUS.jl — Peer-reviewed • Rank 8.0 • Science 98%

SIRUS.jl: Interpretable Machine Learning via Rule Extraction - Published in JOSS (2023)

Scientific Software · Peer-reviewed
Scientific Software
Updated 9 months ago

AdaptiveResonance.jl — Peer-reviewed • Rank 5.9 • Science 100%

AdaptiveResonance.jl: A Julia Implementation of Adaptive Resonance Theory (ART) Algorithms - Published in JOSS (2022)

Scientific Software · Peer-reviewed
Scientific Software
Updated 9 months ago

MOTrainer — Peer-reviewed • Rank 7.8 • Science 98%

MOTrainer: Distributed Measurement Operator Trainer for Data Assimilation Applications - Published in JOSS (2024)

Mathematics
Scientific Software · Peer-reviewed
Scientific Software
Updated 9 months ago

fseval — Peer-reviewed • Rank 7.8 • Science 98%

fseval: A Benchmarking Framework for Feature Selection and Feature Ranking Algorithms - Published in JOSS (2022)

Scientific Software
Updated 9 months ago

hdlib — Peer-reviewed • Rank 7.0 • Science 98%

hdlib: A Python library for designing Vector-Symbolic Architectures - Published in JOSS (2023)

Scientific Software
Updated 9 months ago

ClusterValidityIndices.jl — Peer-reviewed • Rank 4.7 • Science 100%

ClusterValidityIndices.jl: Batch and Incremental Metrics for Unsupervised Learning - Published in JOSS (2022)

Scientific Software · Peer-reviewed
Scientific Software
Updated 9 months ago

Spiral — Peer-reviewed • Rank 4.7 • Science 100%

Spiral: splitters for identifiers in source code files - Published in JOSS (2018)

Scientific Software
Updated 9 months ago

ATHENA — Peer-reviewed • Rank 4.6 • Science 100%

ATHENA: A Fortran package for neural networks - Published in JOSS (2024)

Scientific Software
Updated 9 months ago

GATree — Peer-reviewed • Rank 6.5 • Science 98%

GATree: Evolutionary decision tree classifier in Python - Published in JOSS (2024)

Scientific Software
Updated 9 months ago

ExpFamilyPCA.jl — Peer-reviewed • Rank 4.5 • Science 100%

ExpFamilyPCA.jl: A Julia Package for Exponential Family Principal Component Analysis - Published in JOSS (2025)

Scientific Software
Updated 9 months ago

Pyheartlib — Peer-reviewed • Rank 5.2 • Science 98%

Pyheartlib: A Python package for processing electrocardiogram signals - Published in JOSS (2024)

Scientific Software · Peer-reviewed
Updated 9 months ago

stable-baselines3 • Rank 27.9 • Science 75%

PyTorch version of Stable Baselines, reliable implementations of reinforcement learning algorithms.

Updated 9 months ago

transformers • Rank 38.7 • Science 64%

🤗 Transformers: the model-definition framework for state-of-the-art machine learning models in text, vision, audio, and multimodal models, for both inference and training.

Scientific Software
Updated 9 months ago

Oceananigans.jl — Peer-reviewed • Rank 17.4 • Science 85%

Oceananigans.jl: Fast and friendly geophysical fluid dynamics on GPUs - Published in JOSS (2020)

Scientific Software
Updated 9 months ago

MarSwitching.jl — Peer-reviewed • Rank 3.7 • Science 98%

MarSwitching.jl: A Julia package for Markov switching dynamic models - Published in JOSS (2024)

Earth and Environmental Sciences
Scientific Software · Peer-reviewed
Scientific Software
Updated 9 months ago

Efficiently Learning Relative Similarity Embeddings with Crowdsourcing — Peer-reviewed • Rank 3.2 • Science 98%

Efficiently Learning Relative Similarity Embeddings with Crowdsourcing - Published in JOSS (2023)

Computer Science Mathematics
Scientific Software · Peer-reviewed
Scientific Software
Updated 9 months ago

MACE — Peer-reviewed • Rank 3.0 • Science 98%

MACE: a Machine-learning Approach to Chemistry Emulation - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Updated 9 months ago

hivemind • Rank 23.0 • Science 77%

Decentralized deep learning in PyTorch. Built to train models on thousands of volunteers across the world.

Scientific Software
Updated 9 months ago

MLMOD — Peer-reviewed • Rank 1.8 • Science 98%

MLMOD: Machine Learning Methods for Data-Driven Modeling in LAMMPS - Published in JOSS (2023)

Scientific Software · Peer-reviewed
Updated 9 months ago

boxmot • Rank 22.4 • Science 77%

BoxMOT: Pluggable SOTA multi-object tracking modules modules for segmentation, object detection and pose estimation models

Updated 9 months ago

pypots • Rank 21.6 • Science 77%

A Python toolkit/library for reality-centric machine/deep learning and data mining on partially-observed time series, including SOTA neural network models for scientific analysis tasks of imputation/classification/clustering/forecasting/anomaly detection/cleaning on incomplete industrial (irregularly-sampled) multivariate TS with NaN missing values

Updated 9 months ago

xgboost • Rank 34.6 • Science 64%

Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Dask, Flink and DataFlow

Updated 9 months ago

datasets • Rank 34.4 • Science 64%

🤗 The largest hub of ready-to-use datasets for AI models with fast, easy-to-use and efficient data manipulation tools

Updated 9 months ago

smartsim • Rank 20.7 • Science 77%

SmartSim Infrastructure Library.

Updated 9 months ago

tf-explain • Rank 18.9 • Science 77%

Interpretability Methods for tf.keras models with Tensorflow 2.x

Updated 9 months ago

qonnx • Rank 18.7 • Science 77%

QONNX: Arbitrary-Precision Quantized Neural Networks in ONNX

Updated 9 months ago

miditok • Rank 17.9 • Science 77%

MIDI / symbolic music tokenizers for Deep Learning models 🎶

Scientific Software
Updated 9 months ago

GPJax — Peer-reviewed • Rank 17.6 • Science 77%

GPJax: A Gaussian Process Framework in JAX - Published in JOSS (2022)

Mathematics Earth and Environmental Sciences
Scientific Software · Peer-reviewed
Updated 9 months ago

gladia-torchaudio • Rank 30.4 • Science 64%

Data manipulation and transformation for audio signal processing, powered by PyTorch

Updated 9 months ago

cebra • Rank 16.7 • Science 77%

Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

Updated 9 months ago

ersilia • Rank 16.3 • Science 77%

The Ersilia Model Hub, a repository of AI/ML models for infectious and neglected disease research.

Updated 9 months ago

scikit-activeml • Rank 16.3 • Science 77%

scikit-activeml: Python library for active learning on top of scikit-learn

Updated 9 months ago

quantus • Rank 16.1 • Science 77%

Quantus is an eXplainable AI toolkit for responsible evaluation of neural network explanations

Updated 9 months ago

kangas • Rank 15.9 • Science 77%

🦘 Explore multimedia datasets at scale

Updated 9 months ago

srai • Rank 14.6 • Science 77%

Spatial Representations for Artificial Intelligence - a Python library toolkit for geospatial machine learning focused on creating embeddings for downstream tasks

Updated 9 months ago

aimsim • Rank 16.0 • Science 75%

A Python toolbox to work with molecular similarity

Updated 9 months ago

nobrainer • Rank 13.7 • Science 77%

A framework for developing neural network models for 3D image processing.

Scientific Software
Updated 9 months ago

RxInfer — Peer-reviewed • Rank 13.6 • Science 77%

RxInfer: A Julia package for reactive real-time Bayesian inference - Published in JOSS (2023)

Updated 9 months ago

t-elf • Rank 5.5 • Science 85%

Tensor Extraction of Latent Features (T-ELF). Within T-ELF's arsenal are non-negative matrix and tensor factorization solutions, equipped with automatic model determination (also known as the estimation of latent factors - rank) for accurate data modeling. Our software suite encompasses cutting-edge data pre-processing and post-processing modules.

Updated 9 months ago

cheetah-accelerator • Rank 13.3 • Science 77%

Fast and differentiable particle accelerator optics simulation for reinforcement learning and optimisation applications.

Scientific Software
Updated 9 months ago

DEEPaaS API — Peer-reviewed • Rank 12.9 • Science 77%

DEEPaaS API: a REST API for Machine Learning and Deep Learning models - Published in JOSS (2019)

Updated 9 months ago

onnx2tf • Rank 22.1 • Science 67%

Self-Created Tools to convert ONNX files (NCHW) to TensorFlow/TFLite/Keras format (NHWC). The purpose of this tool is to solve the massive Transpose extrapolation problem in onnx-tensorflow (onnx-tf). I don't need a Star, but give me a pull request.

Updated 9 months ago

nrel-sup3r • Rank 12.1 • Science 77%

The Super-Resolution for Renewable Resource Data (sup3r) software uses generative adversarial networks to create synthetic high-resolution wind and solar spatiotemporal data from coarse low-resolution inputs.