Intracranial Electrode Location and Analysis in MNE-Python
Intracranial Electrode Location and Analysis in MNE-Python - Published in JOSS (2022)
sourmash v4
sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets - Published in JOSS (2024)
sbi reloaded
sbi reloaded: a toolkit for simulation-based inference workflows - Published in JOSS (2025)
bíogo/hts
bíogo/hts: high throughput sequence handling for the Go language - Published in JOSS (2017)
The drake R package
The drake R package: a pipeline toolkit for reproducibility and high-performance computing - Published in JOSS (2018)
The targets R package
The targets R package: a dynamic Make-like function-oriented pipeline toolkit for reproducibility and high-performance computing - Published in JOSS (2021)
Using the tidyverse with terra objects
Using the tidyverse with terra objects: the tidyterra package - Published in JOSS (2023)
Regl-Scatterplot
Regl-Scatterplot: A Scalable Interactive JavaScript-based Scatter Plot Library - Published in JOSS (2023)
osrm
osrm: Interface Between R and the OpenStreetMap-Based Routing Service OSRM - Published in JOSS (2022)
Executorlib – Up-scaling Python workflows for hierarchical heterogenous high-performance computing
Executorlib – Up-scaling Python workflows for hierarchical heterogenous high-performance computing - Published in JOSS (2025)
bíogo
bíogo: a simple high-performance bioinformatics toolkit for the Go language - Published in JOSS (2017)
greta
greta: simple and scalable statistical modelling in R - Published in JOSS (2019)
unyt
unyt: Handle, manipulate, and convert data with units in Python - Published in JOSS (2018)
Managing Larger Data on a GitHub Repository
Managing Larger Data on a GitHub Repository - Published in JOSS (2018)
Generating CodeMeta Metadata for R Packages
Generating CodeMeta Metadata for R Packages - Published in JOSS (2017)
Helper for Bézier Curves, Triangles, and Higher Order Objects
Helper for Bézier Curves, Triangles, and Higher Order Objects - Published in JOSS (2017)
simstudy
simstudy: Illuminating research methods through data generation - Published in JOSS (2020)
Visualizations with statistical details
Visualizations with statistical details: The 'ggstatsplot' approach - Published in JOSS (2021)
osmdata
osmdata - Published in JOSS (2017)
pynucastro
pynucastro: an interface to nuclear reaction rates and code generator for reaction network equations - Published in JOSS (2018)
grlc
grlc: the git repository linked data API constructor. - Published in JOSS (2021)
Symfem
Symfem: a symbolic finite element definition library - Published in JOSS (2021)
pyCSEP
pyCSEP: A Python Toolkit For Earthquake Forecast Developers - Published in JOSS (2022)
qnm
qnm: A Python package for calculating Kerr quasinormal modes, separation constants, and spherical-spheroidal mixing coefficients - Published in JOSS (2019)
Bempp-cl
Bempp-cl: A fast Python based just-in-time compiling boundary element library. - Published in JOSS (2021)
DSSE
DSSE: An environment for simulation of reinforcement learning-empowered drone swarm maritime search and rescue missions - Published in JOSS (2024)
Gala
Gala: A Python package for galactic dynamics - Published in JOSS (2017)
oce
oce: an R package for Oceanographic Analysis - Published in JOSS (2022)
cffr
cffr: Generate Citation File Format Metadata for R Packages - Published in JOSS (2021)
GSODR
GSODR: Global Summary Daily Weather Data in R - Published in JOSS (2017)
Open OnDemand
Open OnDemand: A web-based client portal for HPC centers - Published in JOSS (2018)
osfr
osfr: An R Interface to the Open Science Framework - Published in JOSS (2020)
cfdm
cfdm: A Python reference implementation of the CF data model - Published in JOSS (2020)
MCMCvis
MCMCvis: Tools to Visualize, Manipulate, and Summarize MCMC Output - Published in JOSS (2018)
Cadabra2
Cadabra2: computer algebra for field theory revisited - Published in JOSS (2018)
terrainr
terrainr: An R package for creating immersive virtual environments - Published in JOSS (2022)
Zoomerjoin
Zoomerjoin: Superlatively-Fast Fuzzy Joins - Published in JOSS (2023)
quadkeyr
quadkeyr: Tools for converting QuadKey-identified datasets (Microsoft's Bing Maps Tile System) into raster images and analyzing Meta (Facebook) Mobility Data - Published in JOSS (2024)
statsExpressions
statsExpressions: R Package for Tidy Dataframes and Expressions with Statistical Details - Published in JOSS (2021)
SLEPLET
SLEPLET: Slepian Scale-Discretised Wavelets in Python - Published in JOSS (2023)
filesstrings
filesstrings: An R package for file and string manipulation - Published in JOSS (2017)
MARTINI
MARTINI: Mock Array Radio Telescope Interferometry of the Neutral ISM - Published in JOSS (2024)
A Python Library for Pre- and Post-Processing of DAMASK Simulations
A Python Library for Pre- and Post-Processing of DAMASK Simulations - Published in JOSS (2025)
osmapiR
osmapiR: An 'OpenStreetMap API' implementation for R - Published in JOSS (2024)
ijtiff
ijtiff: An R package providing TIFF I/O for ImageJ users - Published in JOSS (2018)
VCFPy
VCFPy: a Python 3 library with good support for both reading and writing VCF - Published in JOSS (2016)
hydroscoper
hydroscoper: R interface to the Greek National Data Bank for Hydrological and Meteorological Information - Published in JOSS (2018)
OpenTripPlanner for R
OpenTripPlanner for R - Published in JOSS (2019)
ASSUME - Agent-based Simulation for Studying and Understanding Market Evolution
ASSUME - Agent-based Simulation for Studying and Understanding Market Evolution - Published in JOSS (2025)
getCRUCLdata
getCRUCLdata: Use and Explore CRU CL v. 2.0 Climatology Elements in R - Published in JOSS (2017)
BAMnostic
BAMnostic: an OS-agnostic toolkit for genomic sequence analysis - Published in JOSS (2018)
modisfast
modisfast: An R package for fast and efficient access to MODIS, VIIRS and GPM Earth Observation data - Published in JOSS (2024)
forestatrisk
forestatrisk: a Python package for modelling and forecasting deforestation in the tropics - Published in JOSS (2021)
Pyret
Pyret: A Python package for analysis of neurophysiology data - Published in JOSS (2017)
SuchTree
SuchTree: Fast, thread-safe computations with phylogenetic trees - Published in JOSS (2018)
Climate variability indices for ecological and crop models in R
Climate variability indices for ecological and crop models in R: the climatrends package - Published in JOSS (2023)
CLOVER
CLOVER: A modelling framework for sustainable community-scale energy systems - Published in JOSS (2023)
gaussplotR
gaussplotR: Fit, Predict and Plot 2D-Gaussians in R - Published in JOSS (2021)
ms3
ms3: A parser for MuseScore files, serving as data factory for annotated music corpora - Published in JOSS (2023)
StreamGen
StreamGen: a Python framework for generating streams of labeled data - Published in JOSS (2024)
PyFstat
PyFstat: a Python package for continuous gravitational-wave data analysis - Published in JOSS (2021)
CR-Sparse
CR-Sparse: Hardware accelerated functional algorithms for sparse signal processing in Python using JAX - Published in JOSS (2021)
dwctaxon, an R package for editing and validating taxonomic data in Darwin Core format
dwctaxon, an R package for editing and validating taxonomic data in Darwin Core format - Published in JOSS (2024)
spiro
spiro: An R package for analyzing data from cardiopulmonary exercise testing - Published in JOSS (2023)
experDesign
experDesign: stratifying samples into batches with minimal bias - Published in JOSS (2021)
Ecological Metadata as Linked Data
Ecological Metadata as Linked Data - Published in JOSS (2019)
daiquiri
daiquiri: Data Quality Reporting for Temporal Datasets - Published in JOSS (2022)
mcboost
mcboost: Multi-Calibration Boosting for R - Published in JOSS (2021)
phylogram
phylogram: an R package for phylogenetic analysis with nested lists - Published in JOSS (2018)
bsym
bsym: A basic symmetry module - Published in JOSS (2017)
rcites
rcites: An R package to access the CITES Speciesplus database - Published in JOSS (2018)
Caliban
Caliban: Docker-based job manager for reproducible workflows - Published in JOSS (2020)
AltamISA
AltamISA: a Python API for ISA-Tab files - Published in JOSS (2019)
workloopR
workloopR: Analysis of work loops and other data from muscle physiology experiments in R - Published in JOSS (2019)
Noisyopt
Noisyopt: A Python library for optimizing noisy functions. - Published in JOSS (2017)
StormR
StormR: An R package to quantify and map the tropical storms and cyclones’ winds characteristics - Published in JOSS (2024)
approxposterior
approxposterior: Approximate Posterior Distributions in Python - Published in JOSS (2018)
stanscofi and benchscofi
stanscofi and benchscofi: a new standard for drug repurposing by collaborative filtering - Published in JOSS (2024)
weatherOz
weatherOz: An API Client for Australian Weather and Climate Data Resources in R - Published in JOSS (2024)
City2BA
City2BA: Tools for creating synthetic bundle adjustment problems - Published in JOSS (2023)
shar
shar: An R package to analyze species-habitat associations using point pattern analysis - Published in JOSS (2021)
Ethical Smart Grid
Ethical Smart Grid: a Gym environment for learning ethical behaviours - Published in JOSS (2023)
buildH
buildH: Build hydrogen atoms from united-atom molecular dynamics of lipids and calculate the order parameters - Published in JOSS (2021)
predictNMB
predictNMB: An R package to estimate if or when a clinical prediction model is worthwhile - Published in JOSS (2023)
lattice_mc
lattice_mc: A Python Lattice-Gas Monte Carlo Module - Published in JOSS (2017)
TREvoSim v3
TREvoSim v3: An individual based simulation for generating trees and character data - Published in JOSS (2024)
Ethome
Ethome: tools for machine learning of animal behavior - Published in JOSS (2024)
h5fortran
h5fortran: object-oriented polymorphic Fortran interface for HDF5 file IO - Published in JOSS (2021)
The jagstargets R package
The jagstargets R package: a reproducible workflow framework for Bayesian data analysis with JAGS - Published in JOSS (2021)
Django Remote Submission
Django Remote Submission - Published in JOSS (2017)
Pakman
Pakman: a modular, efficient and portable tool for approximate Bayesian inference - Published in JOSS (2020)
Lcopt - An interactive tool for creating fully parameterised Life Cycle Assessment (LCA) foreground models
Lcopt - An interactive tool for creating fully parameterised Life Cycle Assessment (LCA) foreground models - Published in JOSS (2017)
PWSpy
PWSpy: A Python library dedicated to the analysis of Partial Wave Spectroscopic Microscopy data. - Published in JOSS (2022)