Projects

Updated 6 months ago

Python package for processing image-based profiling data

carpenter-lab cellprofiler cytominer image-processing microscopy morphological-profiling python way-lab

Updated 6 months ago

Image-based Profiling Handbook

cellprofiler cytomining guide handbook morphological-profiling

Updated 5 months ago

Open-source software for exploring and analyzing large, high-dimensional image-derived data.

cellprofiler cellprofiler-analyst image-analysis machine-learning

Updated 6 months ago

Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.

cellprofiler python single-cell-analysis way-lab

Updated 6 months ago

Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.

aws cellprofiler docker

Updated 5 months ago

A pixel classification based multiplexed image segmentation pipeline

cellprofiler imc pipeline pixel-classification segmentation ubuntu

Updated 5 months ago

High-dimensional phenotyping to define the genetic basis of cellular morphology

carpenter-lab cellprofiler morphology primary-cells profiling quantitative-trait-loci

ecosyste.ms