TAXPASTA
TAXPASTA: TAXonomic Profile Aggregation and STAndardisation - Published in JOSS (2023)
scalene
Scalene: a high-performance, high-precision CPU, GPU, and memory profiler for Python with AI-powered optimization proposals
viztracer
A debugging and profiling tool that can trace and visualize python code execution
taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
https://github.com/cokelaer/easydev
Common utilities to ease the development of Python packages
cytominer-database
[DEPRECATED] A package for storing morphological profiling data.
https://github.com/datarootsio/tf-profile
CLI tool to profile Terraform runs, written in Go
rma
Redis memory profiler to find the RAM bottlenecks throw scaning key space in real time and aggregate RAM usage statistic by patterns.
https://github.com/datacleaner/datacleaner
The premier open source Data Quality solution
https://github.com/amrex-codes/amrvis
Amrvis is a visualization package specifically designed to read and display output and profiling data from codes built on the AMReX framework.
https://github.com/cytomining/cytominergallery
[Deprecated] A Gallery of Cytominer Vignettes
xpresspipe
An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
https://github.com/cytomining/cytoplot
[Deprecated] Package for visualizing high-dimensional single-cell data
createtaxdb
Parallelised and automated construction of metagenomic classifier databases of different tools
lo2s
Linux OTF2 Sampling - A Lightweight Node-Level Performance Monitoring Tool
https://github.com/broadinstitute/jump_hub
The one-stop-shop for Morphological Profiling and JUMP Cell-Painting
https://github.com/carv-ics-forth/forma
foRMA is a python-based scripted tool that uses SST Dumpi traces to derive a profile of timing, data transfers, data transfer volume etc., for MPI RMA operations.
zns-tools
A set of tools for understanding F2FS usage of ZNS devices, which allow for identifying the on-device locations of files and inodes, mapping the data layout of F2FS files to ZNS zones, and a tracing framework that records I/O activity for ZNS devices and generates visuals of various operational aspects.
https://github.com/cn-upb/nfv-t-cp
NFV time-constrained performance profiling (T-CP) framework
https://github.com/broadinstitute/cmqtl
High-dimensional phenotyping to define the genetic basis of cellular morphology