MetaWards
MetaWards: A flexible metapopulation framework for modelling disease spread - Published in JOSS (2022)
epiworldR
epiworldR: Fast Agent-Based Epi Models - Published in JOSS (2023)
cosasi
cosasi: Graph Diffusion Source Inference in Python - Published in JOSS (2022)
https://github.com/benmaier/tacoma
Temporal networks in Python. Provides fast tools to analyze temporal contact networks and simulate dynamic processes on them using Gillespie's SSA.
r4pde
R package developed as a companion to the book "R for Plant Disease Epidemiology" (R4PDE).
https://github.com/benmaier/gillepi
Provides classes to simulate epidemics on (potentially time-varying) networks using a Gillespie stochastic simulation algorithm or the classic agent based method.
sormas-project
SORMAS (Surveillance, Outbreak Response Management and Analysis System) is an early warning and management system to fight the spread of infectious diseases.