graphlayouts — Peer-reviewed • Rank 19.0 • Science 100%

graphlayouts: Layout algorithms for network visualizations in R - Published in JOSS (2023)

spaghetti — Peer-reviewed • Rank 19.1 • Science 95%

spaghetti: spatial network analysis in PySAL - Published in JOSS (2021)

textnets — Peer-reviewed • Rank 13.9 • Science 100%

textnets: A Python package for text analysis with networks - Published in JOSS (2020)

netrankr — Peer-reviewed • Rank 12.9 • Science 100%

netrankr: An R package for total, partial, and probabilistic rankings in networks - Published in JOSS (2022)

Netgraph — Peer-reviewed • Rank 17.3 • Science 95%

Netgraph: Publication-quality Network Visualisations in Python - Published in JOSS (2023)

superblockify — Peer-reviewed • Rank 8.9 • Science 100%

superblockify: A Python Package for Automated Generation, Visualization, and Analysis of Potential Superblocks in Cities - Published in JOSS (2024)

signnet — Peer-reviewed • Rank 10.3 • Science 98%

signnet: An R package for analyzing signed networks - Published in JOSS (2023)

pymnet — Peer-reviewed • Rank 12.6 • Science 95%

pymnet: A Python Library for Multilayer Networks - Published in JOSS (2024)

Analysis of Prehistoric Iconography with the R package iconr — Peer-reviewed • Rank 9.0 • Science 95%

Analysis of Prehistoric Iconography with the R package iconr - Published in JOSS (2021)

Archeofrag — Peer-reviewed • Rank 10.0 • Science 93%

Archeofrag: an R package for Refitting and Spatial Analysis in Archaeology - Published in JOSS (2022)

graynet — Peer-reviewed • Rank 8.6 • Science 93%

graynet: single-subject morphometric networks for neuroscience connectivity applications - Published in JOSS (2018)

netroles — Peer-reviewed • Rank 0.7 • Science 100%

netroles: A Java library for role equivalence analysis in networks - Published in JOSS (2024)

cosasi — Peer-reviewed • Rank 5.7 • Science 93%

cosasi: Graph Diffusion Source Inference in Python - Published in JOSS (2022)

cytoscape-expand-collapse • Rank 17.9 • Science 75%

A Cytoscape.js extension to expand/collapse nodes for better management of complexity of compound graphs

networkanalysis-ts • Rank 10.5 • Science 77%

TypeScript port of the Java networkanalysis package that provides data structures and algorithms for network analysis.

networkit • Rank 22.5 • Science 64%

NetworKit is a growing open-source toolkit for large-scale network analysis.

fritap • Rank 15.7 • Science 67%

Simplifying SSL/TLS traffic analysis for researchers by making SSL decryption effortless.

netdiffuseR • Rank 13.3 • Science 67%

netdiffuseR: Analysis of Diffusion and Contagion Processes on Networks

biomass • Rank 12.4 • Science 67%

A Python Framework for Modeling and Analysis of Signaling Systems

igraph • Rank 14.8 • Science 64%

Library for the analysis of networks

vosviewer-online • Rank 10.6 • Science 67%

VOSviewer Online is a tool for network visualization. It is a web-based version of VOSviewer, a popular tool for constructing and visualizing bibliometric networks.

deepgraph • Rank 15.0 • Science 59%

Analyze Data with Pandas-based Networks. Documentation:

scapy • Rank 36.1 • Science 36%

Scapy: the Python-based interactive packet manipulation program & library.

who-owns-mass-processing • Rank 4.4 • Science 67%

Deduplicates property owners in Massachusetts using the MassGIS standardized assessors' parcel dataset and the OpenCorporates Bulk Data product.

multiplex • Rank 13.9 • Science 57%

multiplex: algebraic tools for the analysis of multiple social networks

last-mile-routing-analyzer • Rank 3.5 • Science 67%

lmr-analyzer: A powerful toolkit to analyze the interaction between last mile operations and the street network design.

nfstream • Rank 18.1 • Science 49%

NFStream: a Flexible Network Data Analysis Framework.

python-igraph • Rank 11.6 • Science 54%

Python interface for igraph

rigraph • Rank 10.9 • Science 54%

igraph R package

https://github.com/cytoscape/cytoscape-web • Rank 5.6 • Science 59%

A browser-based implementation of Cytoscape for network visualization and analysis. Runs entirely in your browser with data-driven styling, collaborative workflows, and Cytoscape ecosystem integration.

https://github.com/benchmark-urbanism/cityseer-api • Rank 15.2 • Science 49%

Computational tools for urban analysis

sgtsnepi.jl • Rank 4.3 • Science 57%

Julia bindings to SG-t-SNE-Π

infomap • Rank 16.5 • Science 44%

Multi-level network clustering based on the Map Equation

bikenwgrowth • Rank 6.1 • Science 54%

Source code for the paper "Growing urban bicycle networks", exploring algorithmically the limitations of urban bicycle network growth

stripnet • Rank 8.7 • Science 49%

STriP Net: Semantic Similarity of Scientific Papers (S3P) Network

geohabnet • Rank 10.3 • Science 36%

geohabnet R package

hnet • Rank 9.0 • Science 36%

Association ruled based networks using graphical Hypergeometric Networks.

ppde642 • Rank 7.9 • Science 36%

USC urban data science course series in Python

https://github.com/habedi/graphina • Rank 12.8 • Science 26%

A graph data science library for Rust :crab:

networktree • Rank 15.1 • Science 23%

Recursive partitioning (tree models) of psychometric networks

https://github.com/atomashevic/belief-influence • Rank 1.1 • Science 36%

Repository for "Measuring the influence of beliefs in belief networks

btergm • Rank 14.0 • Science 23%

Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood

snahelper • Rank 10.8 • Science 26%

Rstudio Addin for Network Analysis and Visualization

brainGraph • Rank 13.0 • Science 23%

Graph theory analysis of brain MRI data

tidygraph • Rank 21.1 • Science 13%

A tidy API for graph manipulation

netplot • Rank 11.0 • Science 23%

Beautiful graph drawing

ionet • Rank 7.0 • Science 23%

Network Analysis for Input-Output Tables

https://github.com/harrymvr/absorbing-centrality • Rank 8.0 • Science 20%

An implementation of the absorbing random-walk centrality

archnetsci • Rank 4.0 • Science 23%

Code repository and Bookdown project for Online Companion to Network Science in Archaeology by Tom Brughmans and Matthew A. Peeples (Cambridge Manuals in Archaeology)

spNetwork • Rank 11.3 • Science 13%

An R package to perform spatial analysis on networks.

roughnet • Rank 9.5 • Science 13%

R package to draw sketchy, hand-drawn-like networks with roughjs

NetworkInference • Rank 10.1 • Science 10%

R implementation to the netinf algorithm. Infers the most likely diffusion network from a set of events

gwena • Rank 4.8 • Science 10%

Gene Co-expression Network analysis pipeline

https://github.com/atomashevic/dynega-emotions • Rank 0.0 • Science 13%

Repository for paper: "Dynamic Exploratory Graph Analysis of Emotions in Politics"

mastg • Science 44%

The OWASP Mobile Application Security Testing Guide (MASTG) is a comprehensive manual for mobile app security testing and reverse engineering. It describes technical processes for verifying the OWASP Mobile Security Weakness Enumeration (MASWE) weaknesses, which are in alignment with the OWASP MASVS.

dnp3_detection • Science 26%

This repository contains the code about the detection of anomalies over DNP3 protocol and the creation of a Kibana dashboard.

BlockmodelUtils • Science 26%

Julia package for representing and plotting network blockmodels

regrank • Science 26%

Regularized methods for efficient ranking in networks

osmnx-examples • Science 67%

Gallery of OSMnx tutorials, usage examples, and feature demonstrations.

music-analysis • Science 31%

Analysis of influence of music using multiple methods, i.e. clustering musical elements, graph centrality of samplings, predicting popularity from lyrics (2018)

aivpn • Science 44%

The AI VPN provides an security assessment of VPN clients' network traffic to identify cyber security threats.

relatingromanrings_caa2025 • Science 49%

epiworldrshiny • Science 26%

Shiny webapp for epiworldR package

crc_research • Science 44%

This repository contains src and datafiles testing CRCs

matlab-igraph: bringing igraph to MATLAB • Science 98%

matlab-igraph: bringing igraph to MATLAB - Published in JOSS (2025)

MultilayerGraphs.jl — Peer-reviewed • Science 98%

MultilayerGraphs.jl: Multilayer Network Science in Julia - Published in JOSS (2023)

https://github.com/copyleftdev/osilog • Science 26%

a simple osi layer log util

https://github.com/corybrunson/bitriad • Science 23%

R package for triadic analysis of affiliation networks

preferred-network-list-sniffer • Science 44%

A reconnaissance tool for capturing and displaying SSIDs from device's Preferred Network List.

provenancenetworks • Science 49%

Network analysis of Roman tree-ring data. Published in the Journal of Computer Applications in Archaeology (JCAA)

trace • Science 44%

TRACE - Text Reuse Analysis and Comparison Engine

caredensity • Science 26%

An R-Package to Calculate the Care Density or Fragmented Care Density given a Patient-Sharing Network

panacea • Science 13%

Personalized Network-based Anti-Cancer Therapy Appointment

dendronetwork • Science 67%

Package to create dendrochronological networks

netmem • Science 36%

'netmem: Network Measures using Matrices' is an R Package

basic-influence-roles • Science 44%

Detect and measure the Basic Influence Role each node plays in a Directed Network.

proj_naive-embedded-reconstruction • Science 44%

Research project exploring multiplex reconstruction techniques informed by graph embeddings.

networks_gephi • Science 75%

RISE crash course: Gephi

alaamee • Science 67%

Autologistic Actor Attribute Model (ALAAM) parameter estimation, simulation, and goodness-of-fit

https://github.com/dalmolingroup/easylayout • Science 13%

interactive force-directed graph layouts within RStudio

city2graph • Science 67%

Transform geospatial relations into graph representations designed for spatial analysis and Graph Neural Networks (GNNs).

https://github.com/byt3n33dl3/kaylazuread • Science 13%

A Blooded Bayonet for Firewall Throat Cutting. DNS THROATCUTTER

alphaicon • Science 54%

α-Indirect Control in Onion-like Networks

https://github.com/aveek-saha/actornet • Science 13%

🎥 Generate an ego network for any actor

https://github.com/balouf/slotted-aloha-simulator • Science 13%

https://github.com/barabasi-lab/covid-19 • Science 13%

Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19

https://github.com/cn-tu/nta-meta-analysis • Science 23%

https://github.com/cran-task-views/networkanalysis • Science 26%

CRAN Task View: Network Analysis

estimnetdirected • Science 67%

Equilibrium Expectation for ERGM parameter estimation for large networks

bd-lithium • Science 54%

A collection of source codes for network-based multi-omics analysis using integrated genome-wide association studies (GWAS) and transcriptomic data to identify genetic contribution into lithium response in patients with bipolar disorder (BD).

networkromanbarges • Science 49%

Analyses and data on Roman Barges

https://github.com/amr-yasser226/pagerank-power-method • Science 26%

Modular Python implementation of the PageRank algorithm via the power method, with discrete‑math foundations, end‑to‑end code, and experimental validation.

braph-2 • Science 49%

BRAPH 2.0 is a comprehensive software package for the analysis and visualization of brain connectivity data, offering flexible customization, rich visualization capabilities, and a platform for collaboration in neuroscience research.

IGraph/M — Peer-reviewed • Science 95%

IGraph/M: graph theory and network analysis for Mathematica - Published in JOSS (2023)

https://github.com/cdpxe/networkcovertchannels • Science 13%

Some network covert channel projects of my own research, containing a protocol channel tool (protocol switching covert channel, PCT/PSCC), a protocol hopping covert channel (PHCC) tool, the protocol channel-aware active warden (PCAW) and ... VSTT.

socialmediaegographanalysis • Science 31%

Ego Graph Analysis on Social Media.

cube • Science 44%

Intuitive Nonparametric Gene Network Search Algorithm

https://github.com/cwtsleiden/networkanalysis • Science 23%

Java package that provides data structures and algorithms for network analysis.

asc-analysis • Science 44%

DH Scraping and Analyzing the ASC database with Jupyter Notebooks

NADI -- Network Analysis and Data Integration with a Domain Specific Language — Peer-reviewed • Science 98%

NADI -- Network Analysis and Data Integration with a Domain Specific Language - Published in JOSS (2025)