graphlayouts
graphlayouts: Layout algorithms for network visualizations in R - Published in JOSS (2023)
spaghetti
spaghetti: spatial network analysis in PySAL - Published in JOSS (2021)
textnets
textnets: A Python package for text analysis with networks - Published in JOSS (2020)
netrankr
netrankr: An R package for total, partial, and probabilistic rankings in networks - Published in JOSS (2022)
Netgraph
Netgraph: Publication-quality Network Visualisations in Python - Published in JOSS (2023)
superblockify
superblockify: A Python Package for Automated Generation, Visualization, and Analysis of Potential Superblocks in Cities - Published in JOSS (2024)
signnet
signnet: An R package for analyzing signed networks - Published in JOSS (2023)
pymnet
pymnet: A Python Library for Multilayer Networks - Published in JOSS (2024)
Analysis of Prehistoric Iconography with the R package iconr
Analysis of Prehistoric Iconography with the R package iconr - Published in JOSS (2021)
Archeofrag
Archeofrag: an R package for Refitting and Spatial Analysis in Archaeology - Published in JOSS (2022)
graynet
graynet: single-subject morphometric networks for neuroscience connectivity applications - Published in JOSS (2018)
netroles
netroles: A Java library for role equivalence analysis in networks - Published in JOSS (2024)
cosasi
cosasi: Graph Diffusion Source Inference in Python - Published in JOSS (2022)
cytoscape-expand-collapse
A Cytoscape.js extension to expand/collapse nodes for better management of complexity of compound graphs
networkanalysis-ts
TypeScript port of the Java networkanalysis package that provides data structures and algorithms for network analysis.
networkit
NetworKit is a growing open-source toolkit for large-scale network analysis.
fritap
Simplifying SSL/TLS traffic analysis for researchers by making SSL decryption effortless.
netdiffuseR
netdiffuseR: Analysis of Diffusion and Contagion Processes on Networks
vosviewer-online
VOSviewer Online is a tool for network visualization. It is a web-based version of VOSviewer, a popular tool for constructing and visualizing bibliometric networks.
scapy
Scapy: the Python-based interactive packet manipulation program & library.
who-owns-mass-processing
Deduplicates property owners in Massachusetts using the MassGIS standardized assessors' parcel dataset and the OpenCorporates Bulk Data product.
last-mile-routing-analyzer
lmr-analyzer: A powerful toolkit to analyze the interaction between last mile operations and the street network design.
https://github.com/cytoscape/cytoscape-web
A browser-based implementation of Cytoscape for network visualization and analysis. Runs entirely in your browser with data-driven styling, collaborative workflows, and Cytoscape ecosystem integration.
https://github.com/benchmark-urbanism/cityseer-api
Computational tools for urban analysis
bikenwgrowth
Source code for the paper "Growing urban bicycle networks", exploring algorithmically the limitations of urban bicycle network growth
https://github.com/habedi/graphina
A graph data science library for Rust :crab:
https://github.com/atomashevic/belief-influence
Repository for "Measuring the influence of beliefs in belief networks
btergm
Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood
https://github.com/harrymvr/absorbing-centrality
An implementation of the absorbing random-walk centrality
archnetsci
Code repository and Bookdown project for Online Companion to Network Science in Archaeology by Tom Brughmans and Matthew A. Peeples (Cambridge Manuals in Archaeology)
NetworkInference
R implementation to the netinf algorithm. Infers the most likely diffusion network from a set of events
https://github.com/atomashevic/dynega-emotions
Repository for paper: "Dynamic Exploratory Graph Analysis of Emotions in Politics"
bionetworks_estimations
Data and scripts for "Testing biological network motif significance with exponential random graph models"
networks-of-roman-eleusis
A Digital Scholarship Tool for Studying Ancient Epigraphy
mastg
The OWASP Mobile Application Security Testing Guide (MASTG) is a comprehensive manual for mobile app security testing and reverse engineering. It describes technical processes for verifying the OWASP Mobile Security Weakness Enumeration (MASWE) weaknesses, which are in alignment with the OWASP MASVS.
caredensity
An R-Package to Calculate the Care Density or Fragmented Care Density given a Patient-Sharing Network
matlab-igraph: bringing igraph to MATLAB
matlab-igraph: bringing igraph to MATLAB - Published in JOSS (2025)
estimnetdirected
Equilibrium Expectation for ERGM parameter estimation for large networks
dnp3_detection
This repository contains the code about the detection of anomalies over DNP3 protocol and the creation of a Kibana dashboard.
bd-lithium
A collection of source codes for network-based multi-omics analysis using integrated genome-wide association studies (GWAS) and transcriptomic data to identify genetic contribution into lithium response in patients with bipolar disorder (BD).
basic-influence-roles
Detect and measure the Basic Influence Role each node plays in a Directed Network.
BlockmodelUtils
Julia package for representing and plotting network blockmodels
proj_naive-embedded-reconstruction
Research project exploring multiplex reconstruction techniques informed by graph embeddings.
alaamee
Autologistic Actor Attribute Model (ALAAM) parameter estimation, simulation, and goodness-of-fit
https://github.com/dalmolingroup/easylayout
interactive force-directed graph layouts within RStudio
city2graph
Transform geospatial relations into graph representations designed for spatial analysis and Graph Neural Networks (GNNs).
osmnx-examples
Gallery of OSMnx tutorials, usage examples, and feature demonstrations.
https://github.com/amr-yasser226/pagerank-power-method
Modular Python implementation of the PageRank algorithm via the power method, with discrete‑math foundations, end‑to‑end code, and experimental validation.
IGraph/M
IGraph/M: graph theory and network analysis for Mathematica - Published in JOSS (2023)
preferred-network-list-sniffer
A reconnaissance tool for capturing and displaying SSIDs from device's Preferred Network List.
gnnrank
Official code for the ICML2022 paper -- GNNRank: Learning Global Rankings from Pairwise Comparisons via Directed Graph Neural Networks
provenancenetworks
Network analysis of Roman tree-ring data. Published in the Journal of Computer Applications in Archaeology (JCAA)
https://github.com/corybrunson/bitriad
R package for triadic analysis of affiliation networks
https://github.com/cdpxe/networkcovertchannels
Some network covert channel projects of my own research, containing a protocol channel tool (protocol switching covert channel, PCT/PSCC), a protocol hopping covert channel (PHCC) tool, the protocol channel-aware active warden (PCAW) and ... VSTT.
stratospherelinuxips
Slips, a free software behavioral Python intrusion prevention system (IDS/IPS) that uses machine learning to detect malicious behaviors in the network traffic. Stratosphere Laboratory, AIC, FEL, CVUT in Prague.
relatingromanrings_caa2025
music-analysis
Analysis of influence of music using multiple methods, i.e. clustering musical elements, graph centrality of samplings, predicting popularity from lyrics (2018)
pnet_robustness
Reliable interpretability of biology-inspired deep neural networks
https://github.com/balouf/slotted-aloha-simulator
https://github.com/barabasi-lab/covid-19
Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19
https://github.com/cn-tu/nta-meta-analysis
https://github.com/cran-task-views/networkanalysis
CRAN Task View: Network Analysis
braph-2
BRAPH 2.0 is a comprehensive software package for the analysis and visualization of brain connectivity data, offering flexible customization, rich visualization capabilities, and a platform for collaboration in neuroscience research.
aivpn
The AI VPN provides an security assessment of VPN clients' network traffic to identify cyber security threats.
https://github.com/byt3n33dl3/kaylazuread
A Blooded Bayonet for Firewall Throat Cutting. DNS THROATCUTTER