graphlayouts
graphlayouts: Layout algorithms for network visualizations in R - Published in JOSS (2023)
spaghetti
spaghetti: spatial network analysis in PySAL - Published in JOSS (2021)
textnets
textnets: A Python package for text analysis with networks - Published in JOSS (2020)
netrankr
netrankr: An R package for total, partial, and probabilistic rankings in networks - Published in JOSS (2022)
Netgraph
Netgraph: Publication-quality Network Visualisations in Python - Published in JOSS (2023)
superblockify
superblockify: A Python Package for Automated Generation, Visualization, and Analysis of Potential Superblocks in Cities - Published in JOSS (2024)
signnet
signnet: An R package for analyzing signed networks - Published in JOSS (2023)
pymnet
pymnet: A Python Library for Multilayer Networks - Published in JOSS (2024)
Analysis of Prehistoric Iconography with the R package iconr
Analysis of Prehistoric Iconography with the R package iconr - Published in JOSS (2021)
Archeofrag
Archeofrag: an R package for Refitting and Spatial Analysis in Archaeology - Published in JOSS (2022)
graynet
graynet: single-subject morphometric networks for neuroscience connectivity applications - Published in JOSS (2018)
netroles
netroles: A Java library for role equivalence analysis in networks - Published in JOSS (2024)
cosasi
cosasi: Graph Diffusion Source Inference in Python - Published in JOSS (2022)
cytoscape-expand-collapse
A Cytoscape.js extension to expand/collapse nodes for better management of complexity of compound graphs
networkanalysis-ts
TypeScript port of the Java networkanalysis package that provides data structures and algorithms for network analysis.
networkit
NetworKit is a growing open-source toolkit for large-scale network analysis.
fritap
Simplifying SSL/TLS traffic analysis for researchers by making SSL decryption effortless.
netdiffuseR
netdiffuseR: Analysis of Diffusion and Contagion Processes on Networks
vosviewer-online
VOSviewer Online is a tool for network visualization. It is a web-based version of VOSviewer, a popular tool for constructing and visualizing bibliometric networks.
scapy
Scapy: the Python-based interactive packet manipulation program & library.
who-owns-mass-processing
Deduplicates property owners in Massachusetts using the MassGIS standardized assessors' parcel dataset and the OpenCorporates Bulk Data product.
last-mile-routing-analyzer
lmr-analyzer: A powerful toolkit to analyze the interaction between last mile operations and the street network design.
https://github.com/cytoscape/cytoscape-web
A browser-based implementation of Cytoscape for network visualization and analysis. Runs entirely in your browser with data-driven styling, collaborative workflows, and Cytoscape ecosystem integration.
https://github.com/benchmark-urbanism/cityseer-api
Computational tools for urban analysis
bikenwgrowth
Source code for the paper "Growing urban bicycle networks", exploring algorithmically the limitations of urban bicycle network growth
https://github.com/habedi/graphina
A graph data science library for Rust :crab:
https://github.com/atomashevic/belief-influence
Repository for "Measuring the influence of beliefs in belief networks
btergm
Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood
https://github.com/harrymvr/absorbing-centrality
An implementation of the absorbing random-walk centrality
archnetsci
Code repository and Bookdown project for Online Companion to Network Science in Archaeology by Tom Brughmans and Matthew A. Peeples (Cambridge Manuals in Archaeology)
NetworkInference
R implementation to the netinf algorithm. Infers the most likely diffusion network from a set of events
https://github.com/atomashevic/dynega-emotions
Repository for paper: "Dynamic Exploratory Graph Analysis of Emotions in Politics"
https://github.com/cran-task-views/networkanalysis
CRAN Task View: Network Analysis
braph-2
BRAPH 2.0 is a comprehensive software package for the analysis and visualization of brain connectivity data, offering flexible customization, rich visualization capabilities, and a platform for collaboration in neuroscience research.
music-analysis
Analysis of influence of music using multiple methods, i.e. clustering musical elements, graph centrality of samplings, predicting popularity from lyrics (2018)
https://github.com/cwtsleiden/networkanalysis
Java package that provides data structures and algorithms for network analysis.
bd-lithium
A collection of source codes for network-based multi-omics analysis using integrated genome-wide association studies (GWAS) and transcriptomic data to identify genetic contribution into lithium response in patients with bipolar disorder (BD).
basic-influence-roles
Detect and measure the Basic Influence Role each node plays in a Directed Network.
BlockmodelUtils
Julia package for representing and plotting network blockmodels
proj_naive-embedded-reconstruction
Research project exploring multiplex reconstruction techniques informed by graph embeddings.
https://github.com/balouf/slotted-aloha-simulator
https://github.com/dalmolingroup/easylayout
interactive force-directed graph layouts within RStudio
pnet_robustness
Reliable interpretability of biology-inspired deep neural networks
city2graph
Transform geospatial relations into graph representations designed for spatial analysis and Graph Neural Networks (GNNs).
osmnx-examples
Gallery of OSMnx tutorials, usage examples, and feature demonstrations.
gnnrank
Official code for the ICML2022 paper -- GNNRank: Learning Global Rankings from Pairwise Comparisons via Directed Graph Neural Networks
https://github.com/amr-yasser226/pagerank-power-method
Modular Python implementation of the PageRank algorithm via the power method, with discrete‑math foundations, end‑to‑end code, and experimental validation.
https://github.com/corybrunson/bitriad
R package for triadic analysis of affiliation networks
IGraph/M
IGraph/M: graph theory and network analysis for Mathematica - Published in JOSS (2023)
https://github.com/barabasi-lab/covid-19
Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19
https://github.com/cn-tu/nta-meta-analysis
estimnetdirected
Equilibrium Expectation for ERGM parameter estimation for large networks
dnp3_detection
This repository contains the code about the detection of anomalies over DNP3 protocol and the creation of a Kibana dashboard.
aivpn
The AI VPN provides an security assessment of VPN clients' network traffic to identify cyber security threats.
relatingromanrings_caa2025
https://github.com/cdpxe/networkcovertchannels
Some network covert channel projects of my own research, containing a protocol channel tool (protocol switching covert channel, PCT/PSCC), a protocol hopping covert channel (PHCC) tool, the protocol channel-aware active warden (PCAW) and ... VSTT.
https://github.com/byt3n33dl3/kaylazuread
A Blooded Bayonet for Firewall Throat Cutting. DNS THROATCUTTER
MultilayerGraphs.jl
MultilayerGraphs.jl: Multilayer Network Science in Julia - Published in JOSS (2023)
preferred-network-list-sniffer
A reconnaissance tool for capturing and displaying SSIDs from device's Preferred Network List.
NADI -- Network Analysis and Data Integration with a Domain Specific Language
NADI -- Network Analysis and Data Integration with a Domain Specific Language - Published in JOSS (2025)
stratospherelinuxips
Slips, a free software behavioral Python intrusion prevention system (IDS/IPS) that uses machine learning to detect malicious behaviors in the network traffic. Stratosphere Laboratory, AIC, FEL, CVUT in Prague.
provenancenetworks
Network analysis of Roman tree-ring data. Published in the Journal of Computer Applications in Archaeology (JCAA)
bionetworks_estimations
Data and scripts for "Testing biological network motif significance with exponential random graph models"
networks-of-roman-eleusis
A Digital Scholarship Tool for Studying Ancient Epigraphy