rustworkx — Peer-reviewed • Rank 28.3 • Science 100%

rustworkx: A High-Performance Graph Library for Python - Published in JOSS (2022)

spaghetti — Peer-reviewed • Rank 19.1 • Science 95%

spaghetti: spatial network analysis in PySAL - Published in JOSS (2021)

Analysis of Prehistoric Iconography with the R package iconr — Peer-reviewed • Rank 9.0 • Science 95%

Analysis of Prehistoric Iconography with the R package iconr - Published in JOSS (2021)

The plebeian Graph Library — Peer-reviewed • Rank 3.4 • Science 100%

The plebeian Graph Library: A WebGL based network visualisation and diagnostics package - Published in JOSS (2024)

Local clustering — Peer-reviewed • Rank 8.3 • Science 93%

Local clustering - Published in JOSS (2018)

MiSTree — Peer-reviewed • Rank 5.0 • Science 95%

MiSTree: a Python package for constructing and analysing Minimum Spanning Trees - Published in JOSS (2019)

cosasi — Peer-reviewed • Rank 5.7 • Science 93%

cosasi: Graph Diffusion Source Inference in Python - Published in JOSS (2022)

https://github.com/cytoscape/cytoscape.js • Rank 35.6 • Science 59%

Graph theory (network) library for visualisation and analysis

BisPy — Peer-reviewed • Rank 4.4 • Science 77%

BisPy: Bisimulation in Python - Published in JOSS (2021)

igraph • Rank 14.8 • Science 64%

Library for the analysis of networks

deepgraph • Rank 15.0 • Science 59%

Analyze Data with Pandas-based Networks. Documentation:

networkx • Rank 37.8 • Science 36%

Network Analysis in Python

https://github.com/cadam00/seagraphs • Rank 6.7 • Science 67%

Sea Currents to Connectivity Transformation

pynauty • Rank 13.7 • Science 54%

Isomorphism testing and automorphisms of graphs

graphs.jl • Rank 11.8 • Science 54%

An optimized graphs package for the Julia programming language

python-igraph • Rank 11.6 • Science 54%

Python interface for igraph

rigraph • Rank 10.9 • Science 54%

igraph R package

agda-unimath • Rank 9.9 • Science 54%

The agda-unimath library

galoisenne • Rank 6.0 • Science 49%

🕸️ Graphs, finite fields and discrete dynamical systems in Kotlin

serd • Rank 3.2 • Science 44%

SERD: Solvent-Exposed Residues Detection

how-monochromatic • Rank 0.0 • Science 44%

https://github.com/habedi/graphina • Rank 12.8 • Science 26%

A graph data science library for Rust :crab:

brainGraph • Rank 13.0 • Science 23%

Graph theory analysis of brain MRI data

senior-thesis • Rank 0.7 • Science 31%

LaTeX sources for my undergraduate thesis

mully • Rank 10.5 • Science 20%

R package to create, modify and visualize graphs with multiple layers.

https://github.com/fandreuz/bsc-thesis • Rank 2.3 • Science 26%

BSc thesis, Computer Engineering

archnetsci • Rank 4.0 • Science 23%

Code repository and Bookdown project for Online Companion to Network Science in Archaeology by Tom Brughmans and Matthew A. Peeples (Cambridge Manuals in Archaeology)

https://github.com/cadam00/egcorrs • Rank 0.7 • Science 26%

Evolutionary Game Corridors

https://github.com/alan-turing-institute/netts • Rank 9.3 • Science 10%

Toolbox for creating networks capturing semantic content of speech transcripts.

https://github.com/choderalab/gimlet • Rank 5.3 • Science 10%

Graph Inference on MoLEcular Topology

https://github.com/cadam00/priorcon • Science 39%

Graph Community Detection Methods into Systematic Conservation Planning

https://github.com/cadam00/scoredec • Science 49%

S-Core Graph Decomposition

https://github.com/blegat/lsinc1113 • Science 26%

Course material for the course LSINC1113 at UCLouvain

elections • Science 18%

A visual webpage exploring aspects of voting theory, tournaments in graph theory, and the virtues of/downsides to different voting systems

basic-influence-roles • Science 44%

Detect and measure the Basic Influence Role each node plays in a Directed Network.

network_tda_tutorial • Science 49%

This repository is dedicated for the tutorial on network and topological neuroscience.

https://github.com/dalmolingroup/easylayout • Science 13%

interactive force-directed graph layouts within RStudio

repic • Science 67%

REliable PIcking by Consensus (REPIC) - an ensemble learning methodology for cryo-EM particle picking

braph-2 • Science 49%

BRAPH 2.0 is a comprehensive software package for the analysis and visualization of brain connectivity data, offering flexible customization, rich visualization capabilities, and a platform for collaboration in neuroscience research.

syntheticdhn • Science 67%

Synthetic DHN generator model

episimulator • Science 36%

EpiSimulator: A Data-Driven Stochastic Hybrid Model for COVID-19 in Italy.

graphsbase.jl • Science 44%

Basic interface and structures for the JuliaGraphs ecosystem

MultilayerGraphs.jl — Peer-reviewed • Science 98%

MultilayerGraphs.jl: Multilayer Network Science in Julia - Published in JOSS (2023)

https://github.com/d-k-e/graph-analysis • Science 26%

A repo on analysis of graphs as in graph theory

IGraph/M — Peer-reviewed • Science 95%

IGraph/M: graph theory and network analysis for Mathematica - Published in JOSS (2023)

community-aware-graph-transformer • Science 67%

Community-aware Graph Transformer (CGT) is a novel Graph Transformer model that utilizes community structures to address node degree biases in message-passing mechanism and developed by NS Lab @ CUK based on pure PyTorch backend.

sdiagonalizability.jl • Science 44%

A dynamic algorithm to minimize or recognize the S-bandwidth of an undirected graph, written in Julia.