graphlayouts
graphlayouts: Layout algorithms for network visualizations in R - Published in JOSS (2023)
Netwulf
Netwulf: Interactive visualization of networks in Python - Published in JOSS (2019)
chise
A web application to visualize and edit the pathway models represented by SBGN Process Description Notation
cytoscape-expand-collapse
A Cytoscape.js extension to expand/collapse nodes for better management of complexity of compound graphs
cytoscape.js-undo-redo
A Cytoscape.js extension to provide an undo-redo framework
cytoscape-view-utilities
A Cytoscape.js extension to provide miscellenaous view utilities such as hiding and highlighting nodes/edges
pathway-mapper
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
cytoscape-node-editing
A Cytoscape.js extension to provide grapples to resize nodes
cytoscape-context-menus
A Cytoscape.js extension to provide context menu around elements and core instance
netdiffuseR
netdiffuseR: Analysis of Diffusion and Contagion Processes on Networks
cytoscape-autopan-on-drag
A Cytsocape.js extension to automatically pan when nodes are out of canvas bounds
vosviewer-online
VOSviewer Online is a tool for network visualization. It is a web-based version of VOSviewer, a popular tool for constructing and visualizing bibliometric networks.
scapy
Scapy: the Python-based interactive packet manipulation program & library.
scibasic
sciBASIC# is a kind of dialect language which is derive from the native VB.NET language, and written for the data scientist.
canvasXpress
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
https://github.com/benmaier/tacoma
Temporal networks in Python. Provides fast tools to analyze temporal contact networks and simulate dynamic processes on them using Gillespie's SSA.
archnetsci
Code repository and Bookdown project for Online Companion to Network Science in Archaeology by Tom Brughmans and Matthew A. Peeples (Cambridge Manuals in Archaeology)
https://github.com/ivis-at-bilkent/cytoscape.js-graphml
A Cytoscape.js extension to import from and export to GraphML format
https://github.com/acdh-oeaw/acdh-django-netvis
App to visualize model objects as network graph
cytoscape-grid-guide
A Cytsocape.js extension to provide a framework for grid interactions such as grid lines and snapping to grid, and guidelines and snap support for alignment of nodes.
https://github.com/cdcgov/microbetrace
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
cytoscape-edge-editing
A Cytoscape.js extension enabling interactive editing of edge anchor (bend or control) points
https://github.com/cimentadaj/coauthornetwork
Explore your network of coauthors from your Google Scholar profile
sigmajs
sigmajs: An R htmlwidget interface to the sigma.js visualization library - Published in JOSS (2018)
https://github.com/ivis-at-bilkent/cytoscape.js-clipboard
A Cytoscape.js extension to provide copy-paste utilities
GEM
GEM: A Python package for graph embedding methods - Published in JOSS (2018)
https://github.com/dalmolingroup/easylayout
interactive force-directed graph layouts within RStudio