Projects | Open Source Science

Projects

Scientific Software

Updated 9 months ago

HistoJS — Peer-reviewed • Rank 3.1 • Science 98%

HistoJS: Web-Based Analytical Tool for Advancing Multiplexed Images - Published in JOSS (2024)

cell-cell-interaction cell-segmentation digital-slide-archive image-processing mibiscope multichannel multiplexed-imaging multiplexed-imaging-analysis ome-tiff phenotyping proteomics proteomics-data-analysis single-cell spatial-biology spatial-data-analysis whole-slide-imaging

Scientific Software · Peer-reviewed

Updated 9 months ago

bety • Rank 8.3 • Science 51%

Web-interface to the Biofuel Ecophysiological Traits and Yields Database (used by PEcAn and TERRA REF)

agriculture crops database ecosystem-models pecan phenotyping plants postgis ruby trait

Updated 9 months ago

automation • Rank 5.3 • Science 54%

Modular, Scalable Phenomic Data Processing Pipelines

distributed-computing hpc lettuce makeflow phenomics phenotyping pipeline plant plant-phenotyping python sorghum workqueue

Updated 9 months ago

gridscore-next-client • Science 57%

GridScore is a phenotyping application that can be used to score trait data for plants or more generically any data about a subject for certain variables.

app phenotyping pwa trials

Updated 9 months ago

top-api • Science 54%

REST API of the TOP Framework

openapi-specification phenotyping

Updated 9 months ago

top-frontend • Science 44%

JavaScript based frontend of the TOP Framework

phenotyping quasar-framework typescript vuejs

Updated 9 months ago

https://github.com/cbib/linda • Science 26%

Web application for managing experimental and environmental metadata for plant experiments

angular8 arangodb miappe nodejs ontologies phenotyping

Updated 9 months ago

pdi • Science 33%

Phenotypic index measures for oak decline severity

decline index oak phenotyping r

Updated 9 months ago

cop • Science 67%

Core Ontology of Phenotyping

ontology phenotype phenotype-exchange-format phenotyping phenotyping-algorithms

Updated 9 months ago

gridscore • Science 54%

GridScore is a field phenotyping app for trials data.

app phenotyping pwa trials

Updated 9 months ago

historic_pheno_data_analysis • Science 67%

Analysis of wheat and barley historical data from 9 AGENT genebanks.

data-curation phenotyping plant-genetic-resources plant-sciences

Updated 9 months ago

phenomenal • Science 49%

Phenomenal: An automatic open source library for 3D shoot architecture reconstruction and analysis for image-based plant phenotyping

3d automatic openalea phenotyping

Updated 9 months ago

phenotrack3d • Science 39%

Phenotyping Maize over time

maize openalea organs phenotyping tracking