jqjs • Rank 5.6 • Science 57%

Pure-JavaScript implementation of the jq JSON query language

@stdlib/ml-incr-binary-classification • Rank 5.6 • Science 57%

Incrementally perform binary classification using stochastic gradient descent (SGD).

conformal • Rank 13.6 • Science 49%

Tools for conformal inference in regression

stree • Rank 8.6 • Science 54%

Oblique Tree classifier based on SVM nodes

augraphy • Rank 16.6 • Science 46%

Augmentation pipeline for rendering synthetic paper printing, faxing, scanning and copy machine processes

django-sodar-core • Rank 13.6 • Science 49%

SODAR Core: A Django-based framework for building scientific data management web apps

kgp • Rank 8.6 • Science 54%

1000 Genomes Project Metadata R Package

scpubr • Rank 13.6 • Science 49%

Generate high quality, publication ready visualizations for single cell transcriptomics data.

birdnet-analyzer • Rank 16.6 • Science 46%

BirdNET analyzer for scientific audio data processing.

https://github.com/cloudsimplus/cloudsimplus • Rank 13.6 • Science 49%

State-of-the-art Framework 🏗 for Cloud Computing ⛅️ Simulation: a modern, full-featured, easier-to-use, highly extensible 🧩, faster 🚀 and more accurate ☕️ Java 24+ tool for cloud computing research 🎓 Examples: https://github.com/cloudsimplus/cloudsimplus-examples

cellphonedb • Rank 16.6 • Science 46%

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

magic-impute • Rank 16.6 • Science 46%

MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

https://github.com/aise-tudelft/tiny-transformers • Rank 3.6 • Science 59%

Q4-2024 Bachelor Research Project: Architectural Decisions for Language Modelling with (Small) Transformers

GRFolres — Peer-reviewed • Rank 3.6 • Science 59%

GRFolres: A code for modified gravity simulations in strong gravity - Published in JOSS (2024)

pylandstats • Rank 13.6 • Science 49%

Computing landscape metrics in the Python ecosystem

pcntoolkit • Rank 8.6 • Science 54%

Toolbox for normative modelling and spatial inference of neuroimaging data. https://pcntoolkit.readthedocs.io/en/latest/

robvis • Rank 16.6 • Science 46%

A package to quickly visualise risk-of-bias assessment results

homelette • Rank 5.6 • Science 57%

A unified and modular interface to homology modelling software

camtrapml • Rank 8.6 • Science 54%

📷🦔 CamTrapML Python Library for Detecting, Classifying, and Analysing Camera Trap Imagery.

phidl • Rank 8.6 • Science 54%

Python GDS layout and CAD geometry creation

spectral-recovery • Rank 8.6 • Science 54%

Spectral recovery analysis for forested ecosystems in Python. Part of the PEOPLE-ER project.

mitch • Rank 13.6 • Science 49%

An R package for multi-dimensional pathway enrichment analysis

tilings • Rank 13.6 • Science 49%

a Python library for working with gridded permutation and tilings

https://github.com/astropy/pytest-openfiles • Rank 16.6 • Science 46%

Pytest plugin to check for files left open at the end of a test run

gen3sis • Rank 13.6 • Science 49%

Repository of the R-packageGen3sis

vitpose • Rank 8.5 • Science 54%

The official repo for [NeurIPS'22] "ViTPose: Simple Vision Transformer Baselines for Human Pose Estimation" and [TPAMI'23] "ViTPose++: Vision Transformer for Generic Body Pose Estimation"

SciMLExpectations • Rank 8.5 • Science 54%

Fast uncertainty quantification for scientific machine learning (SciML) and differential equations

iglu • Rank 13.5 • Science 49%

R package for Interpreting GLUcose data from CGMs (Continuous Glucose Monitors)

compadre • Rank 13.5 • Science 49%

Compadre (Compatible Particle Discretization and Remap)

pulse2percept • Rank 13.5 • Science 49%

A Python-based simulation framework for bionic vision

pandas-association-measures • Rank 8.5 • Science 54%

Statistical association measures for Python pandas

BoxKit — Peer-reviewed • Rank 3.5 • Science 59%

BoxKit: A Python library to manage analysis of block-structured simulation datasets - Published in JOSS (2023)

skosprovider-sqlalchemy • Rank 13.5 • Science 49%

An implementation of the skosprovider interface against SQLAlchemy.

ebltable • Rank 8.5 • Science 54%

Python package to read in tabulated photon densities and gamma-ray opacities

https://github.com/biomedsciai/causallib • Rank 16.5 • Science 46%

A Python package for modular causal inference analysis and model evaluations

konigcell • Rank 8.5 • Science 54%

Quantitative, Fast Grid-Based Fields Calculations in 2D and 3D - Residence Time Distributions, Velocity Grids, Eulerian Cell Projections etc.

causal-inference-in-r • Rank 8.5 • Science 54%

Causal Inference in R: A book!

@stdlib/blas-ext-base-ssumpw • Rank 5.5 • Science 57%

Calculate the sum of single-precision floating-point strided array elements using pairwise summation.

qpcr • Rank 8.5 • Science 54%

A python package to analyse qPCR data for single-use or high-throughput application

gammaalps • Rank 8.5 • Science 54%

A python code to calculate the conversion probability between photons and axions / axionlike particles

https://github.com/pycroscopy/atomai • Rank 13.5 • Science 49%

Deep and Machine Learning for Microscopy

setuptools-generate • Rank 8.5 • Science 54%

Generate shell completions and man page when building a python package.

@stdlib/blas-ext-base-dapxsumkbn • Rank 5.5 • Science 57%

Add a constant to each double-precision floating-point strided array element and compute the sum using an improved Kahan–Babuška algorithm.

https://github.com/bluescarni/heyoka.py • Rank 13.5 • Science 49%

Python library for ODE integration via Taylor's method and LLVM

tno.mpc.protocols.secure-comparison • Rank 5.5 • Science 57%

TNO PET Lab - secure Multi-Party Computation (MPC) - Protocols - Secure Comparison

@stdlib/datasets-liu-positive-opinion-words-en • Rank 5.4 • Science 57%

A list of positive opinion words.

exponentialutilities.jl • Rank 8.4 • Science 54%

Fast and differentiable implementations of matrix exponentials, Krylov exponential matrix-vector multiplications ("expmv"), KIOPS, ExpoKit functions, and more. All your exponential needs in SciML form.

https://github.com/p-j-smith/lipyphilic • Rank 13.4 • Science 49%

A Python toolkit for the analyis of lipid membrane simulations

nikamap • Rank 8.4 • Science 54%

FSA • Rank 16.4 • Science 46%

FSA (Fisheries Stock Assessment) package provides R functions to conduct typical introductory fisheries analyses.

multiscalebrainparcellator • Rank 3.4 • Science 59%

Multi-Scale Brain Parcellator, part of the Connectome Mapping Toolkit (CMTK), is a BIDS App that implements a full anatomical MRI processing pipeline, from raw T1w data to structural brain parcellation at five different scales.

https://github.com/chendaniely/cdcepi-zika-data_only • Rank 3.4 • Science 59%

cdcepi zika data repository containing only the data files

memapp • Rank 13.4 • Science 49%

The Moving Epidemic Method Shiny Web Application

auth_capture_proxy • Rank 18.4 • Science 44%

A Python project for capturing auth credentials using a proxy.

plinkqc • Rank 13.4 • Science 49%

R package for quality control of plink genetic datasets

nebula • Rank 8.4 • Science 54%

🌌 A network agnostic DHT crawler, monitor, and measurement tool that exposes timely information about DHT networks.

circRNAprofiler • Rank 13.4 • Science 49%

imlp • Rank 10.4 • Science 52%

codebase and dotnet CLI tool for prediction of iMTS-Ls

bore • Rank 8.4 • Science 54%

Bayesian Optimization with Density-Ratio Estimation

@stdlib/blas-ext-base-dnannsumpw • Rank 5.4 • Science 57%

Calculate the sum of double-precision floating-point strided array elements, ignoring NaN values and using pairwise summation.

isogeochem • Rank 8.4 • Science 54%

isogeochem makes working with carbonate oxygen, carbon, and clumped isotope data reproducible and straightforward. Use it to quickly calculate isotope fractionation factors, and apply paleothermometry equations.

neograd • Rank 8.4 • Science 54%

A deep learning framework created from scratch with Python and NumPy

sleep.cmd • Rank 8.4 • Science 54%

Sleep for specified time in Windows Command prompt.

pycrosaccade • Rank 5.4 • Science 57%

Detect microsaccades

assertables • Rank 18.4 • Science 44%

Assertables: a Rust crate of assert macros for testing

pytensor-federated • Rank 8.3 • Science 54%

Distributed differentiable graph computation using PyTensor

nplm • Rank 5.3 • Science 57%

package for the New Physics Learning Machine (NPLM) algorithm

pathvisio • Rank 8.3 • Science 54%

PathVisio - pathway editor, visualization and analysis software

CARNIVAL • Rank 16.3 • Science 46%

CAusal Reasoning for Network Identification with integer VALue programming in R

isaaclab • Rank 13.3 • Science 49%

Unified framework for robot learning built on NVIDIA Isaac Sim

psiturk • Rank 16.3 • Science 46%

An open platform for science on Amazon Mechanical Turk.

phishing-dataset • Rank 5.3 • Science 57%

Phishing dataset with more than 88,000 instances and 111 features. Web application available at. https://gregavrbancic.github.io/Phishing-Dataset/

4dnmetadataschemaxsd2jsonconverter • Rank 3.3 • Science 59%

This is a converter written in Java that translates an XSD microscopy metadata schema into JSON

MsBackendRawFileReader • Rank 13.3 • Science 49%

Spectra MsBackend for Thermo Fisher Scientific's New RawFileReader

dagmc-h5m-file-inspector • Rank 8.3 • Science 54%

Extracts information from DAGMC h5m files including volumes number, material tags

https://github.com/bayer-group/tiffslide • Rank 16.3 • Science 46%

TiffSlide - cloud native openslide-python replacement based on tifffile

fft-conv-pytorch • Rank 8.3 • Science 54%

Implementation of 1D, 2D, and 3D FFT convolutions in PyTorch. Much faster than direct convolutions for large kernel sizes.

richdem • Rank 16.3 • Science 46%

High-performance Terrain and Hydrology Analysis

mpas_tools • Rank 8.3 • Science 54%

MPAS Tools Repository

isatools • Rank 13.3 • Science 49%

ISA tools API

tmu • Rank 13.3 • Science 49%

Implements the Tsetlin Machine, Coalesced Tsetlin Machine, Convolutional Tsetlin Machine, Regression Tsetlin Machine, and Weighted Tsetlin Machine, with support for continuous features, drop clause, Type III Feedback, focused negative sampling, multi-task classifier, autoencoder, literal budget, and one-vs-one multi-class classifier. TMU is written in Python with wrappers for C and CUDA-based clause evaluation and updating.

warbler • Rank 13.3 • Science 49%

streamline acoustic analysis in R

sweet • Rank 8.3 • Science 54%

Official repository for Semantic Web for Earth and Environmental Terminology (SWEET) Ontologies

mbari_wec • Rank 5.3 • Science 57%

Entrypoint to wave harvesting buoy

moly • Rank 8.3 • Science 54%

Molecular Visualization powered by Plotly

https://github.com/cidgoh/dataharmonizer • Rank 13.3 • Science 49%

A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.

refinements • Rank 18.2 • Science 44%

A collection of core object refinements.

gridtools • Rank 8.2 • Science 54%

Libraries and utilities to develop performance portable applications for weather and climate.

benchmarl • Rank 8.2 • Science 54%

BenchMARL is a library for benchmarking Multi-Agent Reinforcement Learning (MARL). BenchMARL allows to quickly compare different MARL algorithms, tasks, and models while being systematically grounded in its two core tenets: reproducibility and standardization.

cve-llm_dataset • Rank 5.2 • Science 57%

This is a dataset intended to train a LLM model for a completely CVE focused input and output.

webmorphR • Rank 8.2 • Science 54%

Reproducible face stimuli

minimalmodbus • Rank 18.2 • Science 44%

Easy-to-use Modbus RTU and Modbus ASCII implementation for Python.

geonapi • Rank 13.2 • Science 49%

R Interface to GeoNetwork API

oidc-agent • Rank 8.2 • Science 54%

oidc-agent for managing OpenID Connect tokens on the command line

mastercurves • Rank 8.2 • Science 54%

Python package for automatically superimposing data sets to create a master curve, using Gaussian process regression and maximum a posteriori estimation.

Bayesian_LSP • Rank 5.2 • Science 57%

A Bayesian hierarchical model that quantifies long-term annual land surface phenology from sparse time series of vegetation indices.

deepfastmlu • Rank 5.2 • Science 57%

Machine learning utilities to help speed up the prototyping process.

samplics — Peer-reviewed • Rank 13.2 • Science 49%

samplics: a Python Package for selecting, weighting and analyzing data from complex sampling designs. - Published in JOSS (2021)

nutpie • Rank 8.2 • Science 54%

Python wrapper for nuts-rs

abcdrl • Rank 8.2 • Science 54%

Modular Single-file Reinfocement Learning Algorithms Library