AMReX
AMReX: a framework for block-structured adaptive mesh refinement - Published in JOSS (2019)
CASTRO
CASTRO: A Massively Parallel Compressible Astrophysics Simulation Code - Published in JOSS (2020)
Trixi
Trixi.jl: Adaptive high-order numerical simulations of conservation laws in Julia
funcscan
(Meta-)genome screening for functional and natural product gene sequences
amr-logic-converter
Convert Abstract Meaning Representation (AMR) into first-order logic
AMR
Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.
https://github.com/chanind/penman-js
Abstract Meaning Representation (AMR) parser and generator for Javascript
https://github.com/amrex-codes/amrvis
Amrvis is a visualization package specifically designed to read and display output and profiling data from codes built on the AMReX framework.
https://github.com/amrex-astro/maestro
A low Mach number stellar hydrodynamics code
metagesim-amr
A new modality of CAMISIM: Metagenomic synthetic data suited for AntiMicrobial Resistance studies
The MOOSE Thermal Hydraulics Module
The MOOSE Thermal Hydraulics Module - Published in JOSS (2024)
shamrock
The Shamrock Framework, an open-source, multi-GPU hydrodynamics framework for astrophysics. Scales seamlessly from laptops to exascale supercomputers, supporting SPH, AMR, and more.
samurai
Intervals coupled with algebra of set to handle adaptive mesh refinement and operators on it.
https://github.com/bacpop/amr_reactapp
AMR prediction from S. pneumoniae assemblies in the browser