Rasusa
Rasusa: Randomly subsample sequencing reads to a specified coverage - Published in JOSS (2022)
https://github.com/biojulia/fastx.jl
Parse and process FASTA and FASTQ formatted files of biological sequences.
recognizer
A tool for domain based annotation with databases from the Conserved Domains Database
plasflow
Software for prediction of plasmid sequences in metagenomic assemblies
fluentdna
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
redundans
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
https://github.com/ajodeh-juma/bixcop-2021-python
Simple to moderate python programming tasks with a focus in bioinformatics
https://github.com/benhid/pymsa
Scoring multiple sequence alignments with Python
https://github.com/cdcgov/clean-genes
A rust crate that automatically cleans up a gene alignment by trimming to ORF and identifying and/or removing problematic sequences.