Scientific Software
Updated 6 months ago

Rasusa — Peer-reviewed • Rank 17.1 • Science 93%

Rasusa: Randomly subsample sequencing reads to a specified coverage - Published in JOSS (2022)

Updated 6 months ago

pyfaidx • Rank 23.0 • Science 49%

Efficient pythonic random access to fasta subsequences

Updated 5 months ago

https://github.com/biojulia/fastx.jl • Rank 13.3 • Science 46%

Parse and process FASTA and FASTQ formatted files of biological sequences.

Updated 6 months ago

demultiplex • Rank 8.6 • Science 49%

Versatile FASTA/FASTQ demultiplexer.

Updated 6 months ago

recognizer • Rank 3.4 • Science 54%

A tool for domain based annotation with databases from the Conserved Domains Database

Updated 6 months ago

pyfastx • Rank 18.1 • Science 36%

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

Updated 6 months ago

fluentdna • Rank 9.0 • Science 13%

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

Updated 6 months ago

crops • Rank 4.9 • Science 13%

Cropping and Renumbering Operations for PDB structure and Sequence files

Updated 6 months ago

bacant • Rank 6.7 • Science 10%

This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.

Updated 6 months ago

seqfu • Science 49%

:rocket: seqfu - Sequece Fastx Utilities

Updated 6 months ago

swarm • Science 77%

A robust and fast clustering method for amplicon-based studies

Updated 6 months ago

integrons • Science 44%

Integron analysis tools. Scripts necessary to reproduce the validation of IntFinder (version 1.0).

Updated 6 months ago

domainanalyzer • Science 44%

Analyze domains regarding their taxonomic distribution, motifs with other domains and export their fasta sequence

Updated 5 months ago

https://github.com/ajodeh-juma/bixcop-2021-python • Science 23%

Simple to moderate python programming tasks with a focus in bioinformatics

Updated 6 months ago

seqhasher • Science 67%

SeqHasher - A tool for hashing individual sequences in FASTA files

Updated 5 months ago

https://github.com/benhid/pymsa • Science 26%

Scoring multiple sequence alignments with Python

Updated 6 months ago

sequenceforge-lite • Science 44%

🧬Simple tool to work with fasta, fastq files and bio seqs

Updated 5 months ago

https://github.com/cdcgov/clean-genes • Science 26%

A rust crate that automatically cleans up a gene alignment by trimming to ORF and identifying and/or removing problematic sequences.